Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00388 and CCNA_00389 are separated by 97 nucleotides CCNA_00389 and CCNA_00390 are separated by 103 nucleotides
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
CCNA_00389: CCNA_00389 - aminomethyltransferase family protein, at 405,104 to 405,895
_00389
CCNA_00390: CCNA_00390 - ADP-heptose--LPS heptosyltransferase, at 405,999 to 407,213
_00390
Position (kb) 405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388 at 404.446 kb on - strand, within CCNA_00388 at 404.455 kb on - strand, within CCNA_00388 at 404.482 kb on - strand, within CCNA_00388 at 404.564 kb on + strand, within CCNA_00388 at 404.608 kb on - strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.671 kb on + strand, within CCNA_00388 at 404.674 kb on + strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.696 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.714 kb on - strand, within CCNA_00388 at 404.722 kb on + strand, within CCNA_00388 at 404.728 kb on + strand, within CCNA_00388 at 404.733 kb on + strand, within CCNA_00388 at 404.752 kb on - strand, within CCNA_00388 at 404.785 kb on - strand, within CCNA_00388 at 404.812 kb on + strand, within CCNA_00388 at 404.858 kb on + strand, within CCNA_00388 at 404.907 kb on + strand, within CCNA_00388 at 404.912 kb on + strand, within CCNA_00388 at 404.936 kb on + strand at 404.943 kb on - strand at 404.953 kb on - strand at 404.968 kb on - strand at 405.103 kb on - strand at 405.119 kb on - strand at 405.313 kb on - strand, within CCNA_00389 at 405.428 kb on + strand, within CCNA_00389 at 405.452 kb on + strand, within CCNA_00389 at 405.516 kb on - strand, within CCNA_00389 at 405.724 kb on + strand, within CCNA_00389 at 405.941 kb on - strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.999 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.107 kb on + strand at 406.185 kb on - strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.190 kb on + strand, within CCNA_00390 at 406.196 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.210 kb on + strand, within CCNA_00390 at 406.335 kb on + strand, within CCNA_00390 at 406.347 kb on + strand, within CCNA_00390 at 406.373 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.419 kb on + strand, within CCNA_00390 at 406.451 kb on + strand, within CCNA_00390 at 406.459 kb on - strand, within CCNA_00390 at 406.559 kb on + strand, within CCNA_00390 at 406.614 kb on - strand, within CCNA_00390 at 406.671 kb on - strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.698 kb on + strand, within CCNA_00390 at 406.706 kb on - strand, within CCNA_00390 at 406.727 kb on + strand, within CCNA_00390 at 406.816 kb on + strand, within CCNA_00390 at 406.840 kb on + strand, within CCNA_00390 at 406.855 kb on + strand, within CCNA_00390 at 406.863 kb on - strand, within CCNA_00390
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 404,125 - -0.2 404,148 - -0.2 404,193 - +0.2 404,199 + -0.5 404,214 + CCNA_00388 0.10 +0.1 404,222 - CCNA_00388 0.11 +0.3 404,230 - CCNA_00388 0.12 +0.3 404,230 - CCNA_00388 0.12 +0.0 404,230 - CCNA_00388 0.12 +0.3 404,247 + CCNA_00388 0.14 -0.8 404,290 + CCNA_00388 0.19 +0.6 404,290 + CCNA_00388 0.19 +0.6 404,305 - CCNA_00388 0.20 -0.1 404,318 + CCNA_00388 0.22 +0.6 404,346 + CCNA_00388 0.25 -0.1 404,349 - CCNA_00388 0.25 -0.4 404,374 - CCNA_00388 0.28 +1.0 404,374 - CCNA_00388 0.28 +1.4 404,374 - CCNA_00388 0.28 +0.2 404,407 - CCNA_00388 0.32 -0.1 404,415 - CCNA_00388 0.33 +0.2 404,415 - CCNA_00388 0.33 +0.0 404,416 - CCNA_00388 0.33 +0.0 404,435 - CCNA_00388 0.35 -0.2 404,436 - CCNA_00388 0.35 +0.4 404,438 + CCNA_00388 0.35 +0.1 404,446 - CCNA_00388 0.36 +0.8 404,455 - CCNA_00388 0.37 +0.8 404,482 - CCNA_00388 0.40 -1.0 404,564 + CCNA_00388 0.50 -1.5 404,608 - CCNA_00388 0.55 +0.7 404,619 + CCNA_00388 0.56 +0.9 404,619 + CCNA_00388 0.56 +0.3 404,619 + CCNA_00388 0.56 -0.2 404,619 + CCNA_00388 0.56 +0.7 404,619 + CCNA_00388 0.56 -0.4 404,627 - CCNA_00388 0.57 +0.1 404,627 - CCNA_00388 0.57 +0.7 404,627 - CCNA_00388 0.57 -0.4 404,640 + CCNA_00388 0.58 +0.1 404,640 + CCNA_00388 0.58 -0.9 404,648 - CCNA_00388 0.59 +0.2 404,648 - CCNA_00388 0.59 +1.6 404,648 - CCNA_00388 0.59 +0.2 404,671 + CCNA_00388 0.62 +0.7 404,674 + CCNA_00388 0.62 +0.5 404,679 - CCNA_00388 0.63 +0.5 404,679 - CCNA_00388 0.63 +0.6 404,696 - CCNA_00388 0.65 -0.0 404,697 - CCNA_00388 0.65 +1.9 404,697 - CCNA_00388 0.65 +0.5 404,704 - CCNA_00388 0.66 +0.3 404,704 - CCNA_00388 0.66 +0.4 404,704 - CCNA_00388 0.66 +0.7 404,714 - CCNA_00388 0.67 +0.8 404,722 + CCNA_00388 0.68 -0.0 404,728 + CCNA_00388 0.68 -1.4 404,733 + CCNA_00388 0.69 -0.5 404,752 - CCNA_00388 0.71 +0.1 404,785 - CCNA_00388 0.75 -0.0 404,812 + CCNA_00388 0.78 -1.1 404,858 + CCNA_00388 0.83 -0.7 404,907 + CCNA_00388 0.89 -0.5 404,912 + CCNA_00388 0.89 -0.3 404,936 + -0.1 404,943 - -0.5 404,953 - +0.7 404,968 - -0.1 405,103 - +0.5 405,119 - -0.2 405,313 - CCNA_00389 0.26 -1.0 405,428 + CCNA_00389 0.41 -1.3 405,452 + CCNA_00389 0.44 -0.7 405,516 - CCNA_00389 0.52 -0.4 405,724 + CCNA_00389 0.78 -2.2 405,941 - -1.0 405,983 + -0.7 405,983 + -0.4 405,983 + -0.6 405,983 + -0.9 405,983 + -0.5 405,983 + -1.0 405,983 + +0.6 405,983 + -0.3 405,983 + +0.4 405,983 + -0.1 405,983 + +1.3 405,983 + +0.1 405,983 + -1.8 405,983 + +1.3 405,983 + -0.2 405,983 + +0.2 405,983 + +0.5 405,983 + -0.2 405,983 + -0.3 405,983 + -0.1 405,983 + +0.6 405,983 + +0.4 405,983 + +0.3 405,983 + -1.0 405,983 + +0.9 405,983 + -0.2 405,983 + +0.4 405,983 + +1.7 405,983 + -0.5 405,983 + +0.3 405,983 + -1.0 405,983 + -0.1 405,983 + +0.2 405,991 - +0.1 405,991 - +1.3 405,991 - -1.5 405,991 - -0.5 405,991 - -1.6 405,991 - +0.3 405,991 - +0.6 405,991 - -1.8 405,991 - -0.8 405,991 - -1.5 405,991 - +0.8 405,991 - -1.0 405,991 - -1.0 405,991 - -1.5 405,991 - +0.4 405,991 - -1.9 405,991 - -0.3 405,991 - -0.9 405,991 - +0.0 405,991 - -1.0 405,991 - -0.4 405,991 - -1.9 405,991 - -1.8 405,991 - +1.4 405,991 - +0.4 405,991 - -1.4 405,991 - -1.7 405,991 - +0.6 405,999 + -0.4 406,009 + -0.9 406,009 + +0.0 406,107 + +1.2 406,185 - CCNA_00390 0.15 -1.5 406,190 + CCNA_00390 0.16 +2.4 406,190 + CCNA_00390 0.16 -1.2 406,190 + CCNA_00390 0.16 -0.2 406,196 + CCNA_00390 0.16 -1.0 406,210 + CCNA_00390 0.17 +0.0 406,210 + CCNA_00390 0.17 -1.0 406,335 + CCNA_00390 0.28 +1.2 406,347 + CCNA_00390 0.29 -0.7 406,373 + CCNA_00390 0.31 -1.0 406,419 + CCNA_00390 0.35 -1.2 406,419 + CCNA_00390 0.35 -2.7 406,451 + CCNA_00390 0.37 +0.2 406,459 - CCNA_00390 0.38 +0.6 406,559 + CCNA_00390 0.46 -0.0 406,614 - CCNA_00390 0.51 -2.0 406,671 - CCNA_00390 0.55 +0.8 406,698 + CCNA_00390 0.58 +0.8 406,698 + CCNA_00390 0.58 +0.4 406,706 - CCNA_00390 0.58 -0.2 406,727 + CCNA_00390 0.60 +0.4 406,816 + CCNA_00390 0.67 -0.4 406,840 + CCNA_00390 0.69 -0.7 406,855 + CCNA_00390 0.70 +0.1 406,863 - CCNA_00390 0.71 +0.1
Or see this region's nucleotide sequence