Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36415

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36410 and BPHYT_RS36415 overlap by 11 nucleotidesBPHYT_RS36415 and BPHYT_RS36420 are separated by 514 nucleotides BPHYT_RS36410: BPHYT_RS36410 - integrase family protein, at 94,993 to 96,930 _RS36410 BPHYT_RS36415: BPHYT_RS36415 - hypothetical protein, at 96,920 to 97,381 _RS36415 BPHYT_RS36420: BPHYT_RS36420 - hypothetical protein, at 97,896 to 98,369 _RS36420 Position (kb) 96 97 98Strain fitness (log2 ratio) -1 0 1 2 3at 96.143 kb on - strand, within BPHYT_RS36410at 96.611 kb on - strandat 96.655 kb on + strand, within BPHYT_RS36410at 96.963 kb on - strandat 97.108 kb on - strand, within BPHYT_RS36415at 97.153 kb on - strand, within BPHYT_RS36415at 97.450 kb on - strandat 97.492 kb on - strandat 97.492 kb on - strandat 97.573 kb on - strandat 97.614 kb on + strandat 97.615 kb on - strandat 97.671 kb on - strandat 98.145 kb on + strand, within BPHYT_RS36420at 98.146 kb on - strand, within BPHYT_RS36420at 98.205 kb on + strand, within BPHYT_RS36420

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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96,143 - BPHYT_RS36410 0.59 +0.4
96,611 - +1.8
96,655 + BPHYT_RS36410 0.86 +2.2
96,963 - -0.1
97,108 - BPHYT_RS36415 0.41 +0.4
97,153 - BPHYT_RS36415 0.50 +0.1
97,450 - +1.5
97,492 - +0.0
97,492 - +0.2
97,573 - +0.5
97,614 + +0.5
97,615 - -1.4
97,671 - +0.1
98,145 + BPHYT_RS36420 0.53 +2.5
98,146 - BPHYT_RS36420 0.53 +0.9
98,205 + BPHYT_RS36420 0.65 +3.3

Or see this region's nucleotide sequence