Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35870

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
7,712	+				-1.6
7,757	+				-0.8
7,757	+				-0.5
7,777	-				-0.3
7,944	+				+2.2
7,944	+				-0.8
7,945	-				+1.0
7,983	-				+0.0
8,036	+				-0.7
8,088	-				+3.0
8,129	+				-0.2
8,129	+				-0.4
8,130	-				+0.8
8,143	-				+0.7
8,247	+		BPHYT_RS35865	0.40	-0.6
8,247	+		BPHYT_RS35865	0.40	+0.5
8,247	+		BPHYT_RS35865	0.40	-1.4
8,248	-		BPHYT_RS35865	0.40	-1.4
8,396	+		BPHYT_RS35865	0.90	+0.5
8,397	-				-1.7
8,498	-				-1.8
8,535	-				-0.8
8,543	+				-0.0
8,616	+				+0.1
8,616	+				+1.1
8,616	+				-0.8
8,618	+				-0.2
8,618	+				+1.1
8,619	-				+1.0
8,619	-				-0.4
8,619	-				-1.0
8,619	-				+0.4
8,619	-				-1.1
8,619	-				-0.1
8,619	-				+0.1
8,622	+				-2.2
8,623	-				+0.0
8,895	+		BPHYT_RS35870	0.31	-1.7
8,896	-		BPHYT_RS35870	0.31	+0.1
8,935	-		BPHYT_RS35870	0.34	+0.1
8,994	+		BPHYT_RS35870	0.39	-3.1
8,994	+		BPHYT_RS35870	0.39	+1.5
8,994	+		BPHYT_RS35870	0.39	-1.7
8,995	-		BPHYT_RS35870	0.39	+0.2
8,995	-		BPHYT_RS35870	0.39	-0.2
9,102	+		BPHYT_RS35870	0.47	-0.0
9,102	+		BPHYT_RS35870	0.47	-0.3
9,105	+		BPHYT_RS35870	0.47	+0.2
9,106	-		BPHYT_RS35870	0.47	-1.0
9,168	-		BPHYT_RS35870	0.52	+2.5
9,330	+		BPHYT_RS35870	0.65	+0.6
9,330	+		BPHYT_RS35870	0.65	+0.8
9,331	-		BPHYT_RS35870	0.65	-1.5
9,365	+		BPHYT_RS35870	0.68	-0.1
9,365	+		BPHYT_RS35870	0.68	+3.5
9,396	+		BPHYT_RS35870	0.70	+0.5
9,396	+		BPHYT_RS35870	0.70	-0.2
9,397	-		BPHYT_RS35870	0.70	-1.6
9,431	+		BPHYT_RS35870	0.73	+0.0
9,431	+		BPHYT_RS35870	0.73	+1.9
9,431	+		BPHYT_RS35870	0.73	-1.4
9,432	-		BPHYT_RS35870	0.73	-1.2
9,432	-		BPHYT_RS35870	0.73	-0.3
9,485	+		BPHYT_RS35870	0.77	-0.5
9,485	+		BPHYT_RS35870	0.77	+1.0
9,486	-		BPHYT_RS35870	0.77	-0.1
9,523	+		BPHYT_RS35870	0.80	+1.3
9,524	-		BPHYT_RS35870	0.80	+0.1
9,572	+		BPHYT_RS35870	0.84	-1.5
9,630	+		BPHYT_RS35870	0.88	-1.4
9,631	-		BPHYT_RS35870	0.88	+0.7
9,660	+				-0.3
9,661	-				+2.0
9,686	+				-2.7
9,686	+				-0.3
9,721	-				-1.3
9,723	+				+1.9
9,724	-				-0.8
9,840	+				-0.1
9,841	-				+0.5
9,841	-				+1.2
9,841	-				+2.0
9,841	-				+0.9
9,868	-				+1.5
9,868	-				-1.5
9,960	+				+2.5
9,961	-				+0.6
9,966	+				+0.5
9,985	-				-1.8
10,011	+				-1.1
10,011	+				+0.3
10,035	+				+0.2
10,036	-				-0.5
10,036	-				-0.1
10,175	+				+0.1
10,175	+				-2.6
10,260	-				+0.4
10,324	-				+0.5
10,353	-				+1.5
10,378	-				-0.2
10,470	+				+0.3
10,470	+				+1.1
10,471	-				-0.8
10,531	+				+0.7
10,640	+		BPHYT_RS35875	0.23	-2.8
10,670	+		BPHYT_RS35875	0.29	-2.2
10,671	-		BPHYT_RS35875	0.29	-0.5
10,683	+		BPHYT_RS35875	0.32	-0.3
10,772	+		BPHYT_RS35875	0.51	+1.5
10,772	+		BPHYT_RS35875	0.51	+1.4