Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34345

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,309,283	-		BPHYT_RS34340	0.65	-0.6
3,309,283	-		BPHYT_RS34340	0.65	-0.4
3,309,326	+		BPHYT_RS34340	0.68	+0.1
3,309,326	+		BPHYT_RS34340	0.68	-2.3
3,309,326	+		BPHYT_RS34340	0.68	+0.5
3,309,326	+		BPHYT_RS34340	0.68	+1.2
3,309,329	-		BPHYT_RS34340	0.68	+0.1
3,309,527	+		BPHYT_RS34340	0.82	-0.5
3,309,646	+		BPHYT_RS34340	0.90	-0.4
3,309,689	+				-0.1
3,309,750	+				+0.9
3,309,761	-				-0.0
3,309,825	-				+1.1
3,309,825	-				-0.2
3,309,854	-				+0.9
3,309,888	-				+0.7
3,310,081	+				-0.4
3,310,081	+				-0.0
3,310,082	-				+0.7
3,310,168	-				-0.4
3,310,284	-		BPHYT_RS34345	0.13	+0.0
3,310,290	+		BPHYT_RS34345	0.13	+0.1
3,310,290	+		BPHYT_RS34345	0.13	-0.3
3,310,477	-		BPHYT_RS34345	0.26	+0.2
3,310,477	-		BPHYT_RS34345	0.26	+0.6
3,310,511	+		BPHYT_RS34345	0.29	+0.7
3,310,511	+		BPHYT_RS34345	0.29	-1.5
3,310,512	-		BPHYT_RS34345	0.29	-1.1
3,310,695	+		BPHYT_RS34345	0.42	-0.5
3,310,695	+		BPHYT_RS34345	0.42	-0.5
3,310,695	+		BPHYT_RS34345	0.42	+0.3
3,310,696	-		BPHYT_RS34345	0.42	-0.3
3,310,696	-		BPHYT_RS34345	0.42	-0.8
3,310,872	+		BPHYT_RS34345	0.55	-0.7
3,311,317	+		BPHYT_RS34345	0.86	-0.2
3,311,318	-		BPHYT_RS34345	0.86	-1.8
3,311,485	-				+3.4
3,311,487	+				+2.2
3,311,567	-				+0.8
3,311,877	-		BPHYT_RS34350	0.67	-1.4
3,311,897	+		BPHYT_RS34350	0.72	+0.9
3,311,897	+		BPHYT_RS34350	0.72	-0.8
3,311,898	-		BPHYT_RS34350	0.72	-2.2
3,311,907	-		BPHYT_RS34350	0.74	-0.1
3,312,032	-				-0.4
3,312,293	+				-0.0
3,312,293	+				+0.9
3,312,294	-				-0.5
3,312,443	-		BPHYT_RS34355	0.12	-1.0
3,312,443	-		BPHYT_RS34355	0.12	+0.3
3,312,443	-		BPHYT_RS34355	0.12	-0.5