Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34175

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,270,292	+		BPHYT_RS34170	0.11	+1.1
3,270,293	-		BPHYT_RS34170	0.11	+0.2
3,270,293	-		BPHYT_RS34170	0.11	+0.7
3,270,293	-		BPHYT_RS34170	0.11	-1.9
3,270,553	+		BPHYT_RS34170	0.49	-0.1
3,270,748	+		BPHYT_RS34170	0.77	+1.3
3,270,794	+		BPHYT_RS34170	0.84	+0.1
3,270,794	+		BPHYT_RS34170	0.84	-1.1
3,270,794	+		BPHYT_RS34170	0.84	+0.6
3,270,794	+		BPHYT_RS34170	0.84	-1.6
3,270,795	-		BPHYT_RS34170	0.84	+1.3
3,270,795	-		BPHYT_RS34170	0.84	+0.0
3,270,795	-		BPHYT_RS34170	0.84	+1.1
3,270,795	-		BPHYT_RS34170	0.84	+0.2
3,270,984	+				+0.6
3,270,985	-				+0.8
3,270,985	-				+0.2
3,270,985	-				-0.3
3,270,989	+				+1.7
3,270,990	-				-0.8
3,270,990	-				+0.9
3,271,164	+				+1.0
3,271,164	+				+0.5
3,271,165	-				+0.5
3,271,314	-		BPHYT_RS34175	0.11	+0.3
3,271,488	-		BPHYT_RS34175	0.27	+0.8
3,271,794	+		BPHYT_RS34175	0.55	-0.8
3,272,100	+		BPHYT_RS34175	0.82	-0.6
3,272,100	+		BPHYT_RS34175	0.82	+1.3
3,272,101	-		BPHYT_RS34175	0.82	-0.3
3,272,101	-		BPHYT_RS34175	0.82	-2.6
3,272,309	-				-0.3
3,272,309	-				+0.0
3,272,790	+				+1.4
3,272,791	-				+0.0
3,272,843	-				+1.7
3,272,843	-				+0.5
3,272,843	-				+1.2
3,272,843	-				-0.1
3,272,843	-				+1.2
3,272,843	-				+0.9
3,272,844	+				-1.8
3,272,844	+				-1.7
3,272,844	+				+0.6
3,272,845	-				+0.8
3,272,845	-				+0.6
3,272,845	-				-0.4
3,272,948	-				+0.8
3,272,948	-				+1.4
3,273,052	-				+0.8
3,273,052	-				+1.2
3,273,080	-				+0.9
3,273,080	-				-1.8
3,273,082	+				+0.6
3,273,082	+				+0.5
3,273,082	+				-2.4
3,273,082	+				+1.5
3,273,083	-				+0.2
3,273,158	+				-0.4
3,273,166	+				+1.4
3,273,190	+				+1.2
3,273,201	-				+1.7
3,273,201	-				+1.8
3,273,201	-				-0.5
3,273,201	-				+1.6
3,273,209	+				+1.0
3,273,210	-				+1.2
3,273,238	+				+0.5
3,273,267	+				+1.6
3,273,291	+				+2.0
3,273,292	-				+1.4