Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31645

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31640 and BPHYT_RS31645 are separated by 251 nucleotidesBPHYT_RS31645 and BPHYT_RS31650 overlap by 1 nucleotides BPHYT_RS31640: BPHYT_RS31640 - GntR family transcriptional regulator, at 2,653,112 to 2,653,879 _RS31640 BPHYT_RS31645: BPHYT_RS31645 - FAD-binding protein, at 2,654,131 to 2,655,630 _RS31645 BPHYT_RS31650: BPHYT_RS31650 - FAD-binding protein, at 2,655,630 to 2,656,697 _RS31650 Position (kb) 2654 2655 2656Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2653.360 kb on + strand, within BPHYT_RS31640at 2653.370 kb on - strand, within BPHYT_RS31640at 2653.584 kb on + strand, within BPHYT_RS31640at 2653.938 kb on - strandat 2654.042 kb on + strandat 2654.138 kb on - strandat 2654.557 kb on + strand, within BPHYT_RS31645at 2654.560 kb on + strand, within BPHYT_RS31645at 2654.561 kb on - strand, within BPHYT_RS31645at 2655.184 kb on + strand, within BPHYT_RS31645at 2655.184 kb on + strand, within BPHYT_RS31645at 2655.805 kb on - strand, within BPHYT_RS31650

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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2,653,360 + BPHYT_RS31640 0.32 +0.4
2,653,370 - BPHYT_RS31640 0.34 -0.1
2,653,584 + BPHYT_RS31640 0.61 +0.6
2,653,938 - -3.2
2,654,042 + +0.0
2,654,138 - -3.5
2,654,557 + BPHYT_RS31645 0.28 -0.2
2,654,560 + BPHYT_RS31645 0.29 +2.3
2,654,561 - BPHYT_RS31645 0.29 +0.4
2,655,184 + BPHYT_RS31645 0.70 +0.7
2,655,184 + BPHYT_RS31645 0.70 +0.1
2,655,805 - BPHYT_RS31650 0.16 +0.1

Or see this region's nucleotide sequence