Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29440 and BPHYT_RS29445 are separated by 6 nucleotides BPHYT_RS29445 and BPHYT_RS29450 are separated by 2 nucleotides BPHYT_RS29450 and BPHYT_RS29455 overlap by 4 nucleotides BPHYT_RS29455 and BPHYT_RS29460 are separated by 182 nucleotides
BPHYT_RS29440: BPHYT_RS29440 - LysR family transcriptional regulator, at 2,159,941 to 2,160,849
_RS29440
BPHYT_RS29445: BPHYT_RS29445 - ribose 1,5-bisphosphate phosphokinase, at 2,160,856 to 2,161,410
_RS29445
BPHYT_RS29450: BPHYT_RS29450 - phosphonate metabolism protein, at 2,161,413 to 2,162,135
_RS29450
BPHYT_RS29455: BPHYT_RS29455 - GntR family transcriptional regulator, at 2,162,132 to 2,162,890
_RS29455
BPHYT_RS29460: BPHYT_RS29460 - alkylphosphonate utilization protein, at 2,163,073 to 2,163,570
_RS29460
Position (kb) 2161
2162
2163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 2161.296 kb on + strand, within BPHYT_RS29445 at 2161.881 kb on + strand, within BPHYT_RS29450 at 2162.092 kb on + strand at 2162.191 kb on - strand at 2162.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C) remove 2,161,296 + BPHYT_RS29445 0.79 +3.3 2,161,881 + BPHYT_RS29450 0.65 -2.2 2,162,092 + -1.2 2,162,191 - -1.4 2,162,982 + -2.5
Or see this region's nucleotide sequence