Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25180

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25175 and BPHYT_RS25180 are separated by 442 nucleotidesBPHYT_RS25180 and BPHYT_RS25185 are separated by 18 nucleotides BPHYT_RS25175: BPHYT_RS25175 - AraC family transcriptional regulator, at 1,220,438 to 1,221,433 _RS25175 BPHYT_RS25180: BPHYT_RS25180 - serine hydroxymethyltransferase, at 1,221,876 to 1,223,150 _RS25180 BPHYT_RS25185: BPHYT_RS25185 - peptidase M19, at 1,223,169 to 1,224,140 _RS25185 Position (kb) 1221 1222 1223 1224Strain fitness (log2 ratio) -1 0 1 2at 1221.087 kb on + strand, within BPHYT_RS25175at 1221.532 kb on + strandat 1221.568 kb on + strandat 1221.568 kb on + strandat 1222.545 kb on + strand, within BPHYT_RS25180at 1222.744 kb on - strand, within BPHYT_RS25180at 1223.521 kb on - strand, within BPHYT_RS25185

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,221,087 + BPHYT_RS25175 0.65 +0.1
1,221,532 + +0.5
1,221,568 + -1.4
1,221,568 + +1.1
1,222,545 + BPHYT_RS25180 0.52 -0.7
1,222,744 - BPHYT_RS25180 0.68 -0.6
1,223,521 - BPHYT_RS25185 0.36 +2.5

Or see this region's nucleotide sequence