Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24130

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS24125 and BPHYT_RS24130 are separated by 241 nucleotidesBPHYT_RS24130 and BPHYT_RS24135 are separated by 30 nucleotides BPHYT_RS24125: BPHYT_RS24125 - endopolygalacturonase, at 978,791 to 980,806 _RS24125 BPHYT_RS24130: BPHYT_RS24130 - tartronate semialdehyde reductase, at 981,048 to 981,941 _RS24130 BPHYT_RS24135: BPHYT_RS24135 - alpha-dehydro-beta-deoxy-D-glucarate aldolase, at 981,972 to 982,772 _RS24135 Position (kb) 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 980.767 kb on - strandat 981.744 kb on - strandat 981.923 kb on + strandat 982.082 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.305 kb on + strand, within BPHYT_RS24135at 982.736 kb on + strandat 982.754 kb on - strandat 982.885 kb on - strandat 982.885 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
980,767 - -0.0
981,744 - +2.1
981,923 + -0.8
982,082 + BPHYT_RS24135 0.14 +0.5
982,305 + BPHYT_RS24135 0.42 -0.0
982,305 + BPHYT_RS24135 0.42 +1.6
982,736 + -3.4
982,754 - -0.5
982,885 - -0.3
982,885 - -1.1

Or see this region's nucleotide sequence