Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23845

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23840 and BPHYT_RS23845 are separated by 672 nucleotidesBPHYT_RS23845 and BPHYT_RS23850 are separated by 40 nucleotides BPHYT_RS23840: BPHYT_RS23840 - methyltransferase, at 915,913 to 916,620 _RS23840 BPHYT_RS23845: BPHYT_RS23845 - hypothetical protein, at 917,293 to 917,817 _RS23845 BPHYT_RS23850: BPHYT_RS23850 - ser/threonine protein phosphatase, at 917,858 to 919,021 _RS23850 Position (kb) 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 916.427 kb on + strand, within BPHYT_RS23840at 916.663 kb on + strandat 916.664 kb on - strandat 916.945 kb on - strandat 916.945 kb on - strandat 916.945 kb on - strandat 917.860 kb on - strandat 917.955 kb on + strandat 917.956 kb on - strandat 917.956 kb on - strandat 918.135 kb on - strand, within BPHYT_RS23850at 918.328 kb on - strand, within BPHYT_RS23850at 918.331 kb on - strand, within BPHYT_RS23850at 918.394 kb on + strand, within BPHYT_RS23850at 918.395 kb on - strand, within BPHYT_RS23850

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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916,427 + BPHYT_RS23840 0.73 -0.6
916,663 + -0.5
916,664 - -3.5
916,945 - -0.0
916,945 - -0.3
916,945 - -1.5
917,860 - +1.2
917,955 + -1.1
917,956 - +0.3
917,956 - +0.2
918,135 - BPHYT_RS23850 0.24 -0.6
918,328 - BPHYT_RS23850 0.40 +2.1
918,331 - BPHYT_RS23850 0.41 +1.7
918,394 + BPHYT_RS23850 0.46 -2.7
918,395 - BPHYT_RS23850 0.46 -1.1

Or see this region's nucleotide sequence