Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22240

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22235 and BPHYT_RS22240 are separated by 256 nucleotidesBPHYT_RS22240 and BPHYT_RS22245 overlap by 4 nucleotides BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658 _RS22235 BPHYT_RS22240: BPHYT_RS22240 - hypothetical protein, at 547,915 to 548,112 _RS22240 BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data), at 548,109 to 549,590 _RS22245 Position (kb) 547 548 549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 547.095 kb on - strand, within BPHYT_RS22235at 547.112 kb on - strand, within BPHYT_RS22235at 547.217 kb on - strand, within BPHYT_RS22235at 547.217 kb on - strand, within BPHYT_RS22235at 547.523 kb on + strandat 547.524 kb on - strandat 547.525 kb on + strandat 547.526 kb on - strandat 547.687 kb on - strandat 547.690 kb on - strandat 547.692 kb on + strandat 547.693 kb on - strandat 547.710 kb on - strandat 547.745 kb on + strandat 547.746 kb on - strandat 547.814 kb on - strandat 547.816 kb on + strandat 547.816 kb on + strandat 547.816 kb on + strandat 547.816 kb on + strandat 547.817 kb on - strandat 547.972 kb on + strand, within BPHYT_RS22240at 547.975 kb on - strand, within BPHYT_RS22240at 547.975 kb on - strand, within BPHYT_RS22240at 548.042 kb on - strand, within BPHYT_RS22240at 548.086 kb on + strand, within BPHYT_RS22240at 548.087 kb on - strand, within BPHYT_RS22240at 548.298 kb on + strand, within BPHYT_RS22245at 548.307 kb on + strand, within BPHYT_RS22245at 548.338 kb on - strand, within BPHYT_RS22245at 548.538 kb on + strand, within BPHYT_RS22245at 548.539 kb on - strand, within BPHYT_RS22245at 548.644 kb on - strand, within BPHYT_RS22245at 548.644 kb on - strand, within BPHYT_RS22245at 548.644 kb on - strand, within BPHYT_RS22245at 548.700 kb on + strand, within BPHYT_RS22245at 548.700 kb on + strand, within BPHYT_RS22245at 548.700 kb on + strand, within BPHYT_RS22245at 548.701 kb on - strand, within BPHYT_RS22245at 548.781 kb on + strand, within BPHYT_RS22245at 548.782 kb on - strand, within BPHYT_RS22245at 548.892 kb on - strand, within BPHYT_RS22245

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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547,095 - BPHYT_RS22235 0.60 -2.7
547,112 - BPHYT_RS22235 0.61 -2.0
547,217 - BPHYT_RS22235 0.69 -1.2
547,217 - BPHYT_RS22235 0.69 -1.5
547,523 + -0.5
547,524 - -1.5
547,525 + -0.9
547,526 - -4.0
547,687 - -1.3
547,690 - -2.6
547,692 + +0.4
547,693 - -2.6
547,710 - -1.7
547,745 + -1.6
547,746 - -0.7
547,814 - -2.0
547,816 + +0.6
547,816 + -1.1
547,816 + -1.1
547,816 + -2.7
547,817 - -1.6
547,972 + BPHYT_RS22240 0.29 -1.0
547,975 - BPHYT_RS22240 0.30 -1.3
547,975 - BPHYT_RS22240 0.30 -2.0
548,042 - BPHYT_RS22240 0.64 -0.3
548,086 + BPHYT_RS22240 0.86 -2.2
548,087 - BPHYT_RS22240 0.87 -2.0
548,298 + BPHYT_RS22245 0.13 -1.4
548,307 + BPHYT_RS22245 0.13 -2.5
548,338 - BPHYT_RS22245 0.15 -0.5
548,538 + BPHYT_RS22245 0.29 +0.4
548,539 - BPHYT_RS22245 0.29 -2.0
548,644 - BPHYT_RS22245 0.36 -1.6
548,644 - BPHYT_RS22245 0.36 -4.3
548,644 - BPHYT_RS22245 0.36 -1.8
548,700 + BPHYT_RS22245 0.40 -1.1
548,700 + BPHYT_RS22245 0.40 -1.1
548,700 + BPHYT_RS22245 0.40 +0.4
548,701 - BPHYT_RS22245 0.40 -1.1
548,781 + BPHYT_RS22245 0.45 -1.9
548,782 - BPHYT_RS22245 0.45 -0.8
548,892 - BPHYT_RS22245 0.53 -2.0

Or see this region's nucleotide sequence