Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21705

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21700 and BPHYT_RS21705 are separated by 148 nucleotidesBPHYT_RS21705 and BPHYT_RS21710 are separated by 187 nucleotides BPHYT_RS21700: BPHYT_RS21700 - phosphotransacetylase, at 423,371 to 424,405 _RS21700 BPHYT_RS21705: BPHYT_RS21705 - sulfoacetaldehyde acetyltransferase, at 424,554 to 426,386 _RS21705 BPHYT_RS21710: BPHYT_RS21710 - DeoR faimly transcriptional regulator, at 426,574 to 428,007 _RS21710 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -1 0 1 2 3at 424.189 kb on + strand, within BPHYT_RS21700at 424.190 kb on - strand, within BPHYT_RS21700at 424.406 kb on - strandat 424.561 kb on + strandat 424.562 kb on - strandat 424.570 kb on + strandat 424.813 kb on + strand, within BPHYT_RS21705at 424.945 kb on + strand, within BPHYT_RS21705at 424.946 kb on - strand, within BPHYT_RS21705at 425.065 kb on + strand, within BPHYT_RS21705at 425.167 kb on + strand, within BPHYT_RS21705at 425.633 kb on - strand, within BPHYT_RS21705at 425.633 kb on - strand, within BPHYT_RS21705at 425.837 kb on - strand, within BPHYT_RS21705at 425.950 kb on + strand, within BPHYT_RS21705at 425.951 kb on - strand, within BPHYT_RS21705at 426.065 kb on - strand, within BPHYT_RS21705at 426.594 kb on - strandat 427.076 kb on - strand, within BPHYT_RS21710at 427.298 kb on + strand, within BPHYT_RS21710at 427.330 kb on - strand, within BPHYT_RS21710

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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424,189 + BPHYT_RS21700 0.79 +1.6
424,190 - BPHYT_RS21700 0.79 -0.1
424,406 - +0.9
424,561 + +1.9
424,562 - +0.6
424,570 + +1.5
424,813 + BPHYT_RS21705 0.14 +1.9
424,945 + BPHYT_RS21705 0.21 +2.7
424,946 - BPHYT_RS21705 0.21 +2.2
425,065 + BPHYT_RS21705 0.28 +1.0
425,167 + BPHYT_RS21705 0.33 +0.8
425,633 - BPHYT_RS21705 0.59 -1.3
425,633 - BPHYT_RS21705 0.59 +1.9
425,837 - BPHYT_RS21705 0.70 +3.5
425,950 + BPHYT_RS21705 0.76 +1.2
425,951 - BPHYT_RS21705 0.76 +2.9
426,065 - BPHYT_RS21705 0.82 +1.7
426,594 - +2.4
427,076 - BPHYT_RS21710 0.35 +1.2
427,298 + BPHYT_RS21710 0.50 +0.6
427,330 - BPHYT_RS21710 0.53 -0.6

Or see this region's nucleotide sequence