Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20295 and BPHYT_RS20300 are separated by 415 nucleotides BPHYT_RS20300 and BPHYT_RS20305 are separated by 107 nucleotides BPHYT_RS20305 and BPHYT_RS20310 are separated by 392 nucleotides
BPHYT_RS20295: BPHYT_RS20295 - ligand-gated channel, at 112,566 to 114,749
_RS20295
BPHYT_RS20300: BPHYT_RS20300 - isocitrate dehydrogenase, at 115,165 to 117,393
_RS20300
BPHYT_RS20305: BPHYT_RS20305 - hypothetical protein, at 117,501 to 117,731
_RS20305
BPHYT_RS20310: BPHYT_RS20310 - alpha/beta hydrolase, at 118,124 to 118,942
_RS20310
Position (kb) 115
116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.187 kb on + strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.188 kb on - strand, within BPHYT_RS20295 at 114.220 kb on + strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.419 kb on - strand, within BPHYT_RS20295 at 114.844 kb on - strand at 114.868 kb on + strand at 114.923 kb on - strand at 114.937 kb on - strand at 114.937 kb on - strand at 115.026 kb on - strand at 115.041 kb on + strand at 115.043 kb on + strand at 115.137 kb on + strand at 117.484 kb on - strand at 117.600 kb on + strand, within BPHYT_RS20305 at 117.600 kb on + strand, within BPHYT_RS20305 at 117.600 kb on + strand, within BPHYT_RS20305 at 117.601 kb on - strand, within BPHYT_RS20305 at 117.601 kb on - strand, within BPHYT_RS20305 at 117.655 kb on + strand, within BPHYT_RS20305 at 117.656 kb on - strand, within BPHYT_RS20305 at 117.656 kb on - strand, within BPHYT_RS20305 at 117.692 kb on - strand, within BPHYT_RS20305 at 117.735 kb on + strand at 117.755 kb on - strand at 117.867 kb on + strand at 117.868 kb on - strand at 117.935 kb on + strand at 118.251 kb on + strand, within BPHYT_RS20310 at 118.252 kb on - strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310 at 118.341 kb on + strand, within BPHYT_RS20310
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C) remove 114,187 + BPHYT_RS20295 0.74 +3.1 114,187 + BPHYT_RS20295 0.74 -0.7 114,188 - BPHYT_RS20295 0.74 +1.4 114,188 - BPHYT_RS20295 0.74 +1.4 114,220 + BPHYT_RS20295 0.76 -1.1 114,419 - BPHYT_RS20295 0.85 -2.3 114,419 - BPHYT_RS20295 0.85 +0.6 114,844 - -0.0 114,868 + +0.1 114,923 - -0.9 114,937 - -0.3 114,937 - -0.7 115,026 - -2.0 115,041 + +0.4 115,043 + -2.7 115,137 + +2.3 117,484 - +0.4 117,600 + BPHYT_RS20305 0.43 -0.2 117,600 + BPHYT_RS20305 0.43 -0.5 117,600 + BPHYT_RS20305 0.43 -0.4 117,601 - BPHYT_RS20305 0.43 -0.1 117,601 - BPHYT_RS20305 0.43 +0.1 117,655 + BPHYT_RS20305 0.67 +0.2 117,656 - BPHYT_RS20305 0.67 -0.6 117,656 - BPHYT_RS20305 0.67 +1.9 117,692 - BPHYT_RS20305 0.83 -2.2 117,735 + +0.1 117,755 - -2.4 117,867 + -2.8 117,868 - +0.2 117,935 + +0.1 118,251 + BPHYT_RS20310 0.16 -0.4 118,252 - BPHYT_RS20310 0.16 +0.3 118,341 + BPHYT_RS20310 0.26 -0.2 118,341 + BPHYT_RS20310 0.26 +0.9 118,341 + BPHYT_RS20310 0.26 -0.7
Or see this region's nucleotide sequence