Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19980

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19975 and BPHYT_RS19980 are separated by 29 nucleotidesBPHYT_RS19980 and BPHYT_RS19985 are separated by 2 nucleotides BPHYT_RS19975: BPHYT_RS19975 - IclR family transcriptional regulator, at 24,912 to 25,676 _RS19975 BPHYT_RS19980: BPHYT_RS19980 - citrate synthase, at 25,706 to 26,530 _RS19980 BPHYT_RS19985: BPHYT_RS19985 - CoA-transferase, at 26,533 to 27,732 _RS19985 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.895 kb on - strandat 24.902 kb on - strandat 25.011 kb on + strand, within BPHYT_RS19975at 25.012 kb on - strand, within BPHYT_RS19975at 25.053 kb on + strand, within BPHYT_RS19975at 25.129 kb on - strand, within BPHYT_RS19975at 25.251 kb on + strand, within BPHYT_RS19975at 25.405 kb on - strand, within BPHYT_RS19975at 25.428 kb on + strand, within BPHYT_RS19975at 25.428 kb on + strand, within BPHYT_RS19975at 25.429 kb on - strand, within BPHYT_RS19975at 25.674 kb on + strandat 25.737 kb on + strandat 26.172 kb on + strand, within BPHYT_RS19980at 26.172 kb on + strand, within BPHYT_RS19980at 26.173 kb on - strand, within BPHYT_RS19980at 27.308 kb on + strand, within BPHYT_RS19985

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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24,895 - +0.3
24,902 - -0.1
25,011 + BPHYT_RS19975 0.13 -2.1
25,012 - BPHYT_RS19975 0.13 -0.9
25,053 + BPHYT_RS19975 0.18 -0.4
25,129 - BPHYT_RS19975 0.28 +0.3
25,251 + BPHYT_RS19975 0.44 -1.8
25,405 - BPHYT_RS19975 0.64 -0.4
25,428 + BPHYT_RS19975 0.67 -0.8
25,428 + BPHYT_RS19975 0.67 +0.3
25,429 - BPHYT_RS19975 0.68 -3.1
25,674 + +3.7
25,737 + -0.2
26,172 + BPHYT_RS19980 0.56 -0.8
26,172 + BPHYT_RS19980 0.56 -0.0
26,173 - BPHYT_RS19980 0.57 -0.9
27,308 + BPHYT_RS19985 0.65 -0.9

Or see this region's nucleotide sequence