Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16700

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,779,041	+		BPHYT_RS16690	0.74	+0.1
3,779,041	+		BPHYT_RS16690	0.74	+1.4
3,779,041	+		BPHYT_RS16690	0.74	-0.0
3,779,174	+				-0.6
3,779,217	+				+0.8
3,779,218	-				-0.5
3,779,218	-				-2.0
3,779,218	-				+1.0
3,779,218	-				+1.9
3,779,232	+				+0.4
3,779,232	+				+1.7
3,779,301	+		BPHYT_RS16695	0.11	+0.2
3,779,302	-		BPHYT_RS16695	0.12	-0.5
3,779,302	-		BPHYT_RS16695	0.12	+0.4
3,779,332	-		BPHYT_RS16695	0.16	+0.5
3,779,332	-		BPHYT_RS16695	0.16	-0.9
3,779,332	-		BPHYT_RS16695	0.16	+0.3
3,779,347	-		BPHYT_RS16695	0.18	-0.8
3,779,423	-		BPHYT_RS16695	0.28	-0.6
3,779,423	-		BPHYT_RS16695	0.28	+0.1
3,779,485	-		BPHYT_RS16695	0.36	+0.3
3,779,485	-		BPHYT_RS16695	0.36	-1.7
3,779,700	+		BPHYT_RS16695	0.65	+0.5
3,779,731	+		BPHYT_RS16695	0.70	+0.4
3,779,732	-		BPHYT_RS16695	0.70	+0.1
3,779,732	-		BPHYT_RS16695	0.70	+0.8
3,779,751	+		BPHYT_RS16695	0.72	-1.2
3,779,752	-		BPHYT_RS16695	0.72	+0.5
3,779,752	-		BPHYT_RS16695	0.72	-0.8
3,779,752	-		BPHYT_RS16695	0.72	-1.1
3,779,752	-		BPHYT_RS16695	0.72	+0.2
3,779,752	-		BPHYT_RS16695	0.72	-0.0
3,779,855	-		BPHYT_RS16695	0.86	+0.2
3,779,893	-				+0.7
3,779,893	-				+0.2
3,779,893	-				+1.4
3,779,893	-				-0.6
3,779,949	+				+1.3
3,780,033	+				+0.9
3,780,033	+				+0.7
3,780,071	-				+1.5
3,780,071	-				-1.5
3,780,071	-				+0.6
3,780,071	-				+1.2
3,780,151	+		BPHYT_RS16700	0.13	+1.1
3,780,151	+		BPHYT_RS16700	0.13	+0.5
3,780,781	+		BPHYT_RS16700	0.83	+1.9
3,780,781	+		BPHYT_RS16700	0.83	+0.5
3,780,782	-		BPHYT_RS16700	0.83	-0.3
3,780,785	-		BPHYT_RS16700	0.83	+1.3
3,780,855	-				+0.4
3,780,967	-				+0.3
3,780,974	+				-0.2
3,780,978	+				+1.2
3,780,989	+				+0.7
3,780,989	+				+0.8
3,780,989	+				+0.6
3,780,989	+				+0.6
3,780,989	+				+0.4
3,780,990	-				+0.6
3,780,995	+				-1.9
3,780,995	+				-1.4
3,780,995	+				+0.5
3,780,996	-				-0.4
3,780,997	+				-0.2
3,780,997	+				+0.5
3,780,997	+				+3.5
3,780,997	+				-0.2
3,780,997	+				+0.4
3,780,998	-				+2.3
3,781,069	-				-0.1
3,781,205	-				-0.6