Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16440

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,726,367	+		BPHYT_RS16435	0.42	+0.0
3,726,367	+		BPHYT_RS16435	0.42	+0.1
3,726,526	+		BPHYT_RS16435	0.54	-1.1
3,726,670	+		BPHYT_RS16435	0.65	-0.8
3,726,670	+		BPHYT_RS16435	0.65	+1.3
3,726,670	+		BPHYT_RS16435	0.65	+0.3
3,726,670	+		BPHYT_RS16435	0.65	+0.1
3,726,670	+		BPHYT_RS16435	0.65	-0.5
3,726,670	+		BPHYT_RS16435	0.65	+2.0
3,726,671	-		BPHYT_RS16435	0.65	+0.5
3,726,671	-		BPHYT_RS16435	0.65	+0.5
3,726,671	-		BPHYT_RS16435	0.65	+0.1
3,726,706	+		BPHYT_RS16435	0.68	-0.0
3,726,706	+		BPHYT_RS16435	0.68	+0.9
3,726,707	-				+3.1
3,726,808	+		BPHYT_RS16435	0.76	-1.1
3,726,924	+		BPHYT_RS16435	0.85	-1.2
3,726,924	+		BPHYT_RS16435	0.85	-0.5
3,727,036	+				-0.5
3,727,036	+				+1.6
3,727,036	+				+1.5
3,727,036	+				+0.1
3,727,037	-				-0.5
3,727,037	-				+0.2
3,727,044	+				-2.6
3,727,044	+				+1.5
3,727,044	+				-0.9
3,727,045	-				+1.3
3,727,045	-				-0.1
3,727,045	-				+1.3
3,727,204	+				-0.1
3,727,208	+				-1.3
3,727,209	-				-0.6
3,727,306	+				-1.6
3,727,307	-				+0.4
3,727,335	-				+0.7
3,727,335	-				+1.3
3,727,343	+				-1.6
3,727,422	+		BPHYT_RS16440	0.17	-1.5
3,727,422	+		BPHYT_RS16440	0.17	-0.2
3,727,447	-		BPHYT_RS16440	0.21	+0.9
3,727,470	+		BPHYT_RS16440	0.25	-1.1
3,727,470	+		BPHYT_RS16440	0.25	-0.5
3,727,470	+		BPHYT_RS16440	0.25	-2.0
3,727,470	+		BPHYT_RS16440	0.25	-0.2
3,727,470	+		BPHYT_RS16440	0.25	-0.7
3,727,471	-		BPHYT_RS16440	0.25	+0.8
3,727,471	-		BPHYT_RS16440	0.25	+0.4
3,727,471	-		BPHYT_RS16440	0.25	+0.5
3,727,471	-		BPHYT_RS16440	0.25	+0.5
3,727,471	-		BPHYT_RS16440	0.25	-0.4
3,727,475	+		BPHYT_RS16440	0.26	+0.6
3,727,475	+		BPHYT_RS16440	0.26	-0.6
3,727,476	-		BPHYT_RS16440	0.26	+0.1
3,727,489	-		BPHYT_RS16440	0.28	+0.8
3,727,551	+		BPHYT_RS16440	0.38	-0.8
3,727,551	+		BPHYT_RS16440	0.38	-1.8
3,727,551	+		BPHYT_RS16440	0.38	-0.3
3,727,551	+		BPHYT_RS16440	0.38	-1.2
3,727,552	-		BPHYT_RS16440	0.38	+0.9
3,727,552	-		BPHYT_RS16440	0.38	+0.6
3,727,572	+		BPHYT_RS16440	0.42	-1.0
3,727,572	+		BPHYT_RS16440	0.42	-2.7
3,727,572	+		BPHYT_RS16440	0.42	-1.5
3,727,630	+		BPHYT_RS16440	0.51	-1.5
3,727,710	+		BPHYT_RS16440	0.64	-1.1
3,727,710	+		BPHYT_RS16440	0.64	-1.2
3,727,710	+		BPHYT_RS16440	0.64	-2.1
3,727,710	+		BPHYT_RS16440	0.64	-0.5
3,727,711	-		BPHYT_RS16440	0.64	+0.1
3,727,809	+		BPHYT_RS16440	0.80	-1.6
3,727,809	+		BPHYT_RS16440	0.80	-1.2
3,727,810	-		BPHYT_RS16440	0.80	+1.2
3,727,824	+		BPHYT_RS16440	0.82	-3.3
3,727,824	+		BPHYT_RS16440	0.82	-1.2
3,727,824	+		BPHYT_RS16440	0.82	-2.9
3,727,824	+		BPHYT_RS16440	0.82	-2.0
3,727,824	+		BPHYT_RS16440	0.82	-1.1
3,727,865	+		BPHYT_RS16440	0.89	-2.2
3,727,865	+		BPHYT_RS16440	0.89	-2.7
3,727,865	+		BPHYT_RS16440	0.89	-2.2
3,727,865	+		BPHYT_RS16440	0.89	-1.6
3,727,923	+				-3.2
3,727,960	+				-3.3
3,727,960	+				-1.8
3,727,961	-				+2.9
3,727,984	-				+2.0
3,728,092	+				+4.3
3,728,092	+				-1.8
3,728,093	-				+2.4
3,728,147	+				+0.0
3,728,455	-		BPHYT_RS16445	0.20	+2.2
3,728,615	-				+5.1