Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16240

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,686,109	+		BPHYT_RS16235	0.36	+0.5
3,686,109	+		BPHYT_RS16235	0.36	-0.4
3,686,109	+		BPHYT_RS16235	0.36	-0.0
3,686,124	-		BPHYT_RS16235	0.37	+1.8
3,686,238	+		BPHYT_RS16235	0.47	-0.0
3,686,238	+		BPHYT_RS16235	0.47	-0.3
3,686,239	-		BPHYT_RS16235	0.47	-0.2
3,686,307	+		BPHYT_RS16235	0.52	+0.3
3,686,505	+		BPHYT_RS16235	0.68	+3.8
3,686,507	+		BPHYT_RS16235	0.68	+0.1
3,686,508	-		BPHYT_RS16235	0.68	+0.4
3,686,508	-		BPHYT_RS16235	0.68	-0.1
3,686,508	-		BPHYT_RS16235	0.68	-0.4
3,686,508	-		BPHYT_RS16235	0.68	-0.4
3,686,508	-		BPHYT_RS16235	0.68	+1.5
3,686,508	-		BPHYT_RS16235	0.68	+1.3
3,686,511	+		BPHYT_RS16235	0.68	-1.3
3,686,511	+		BPHYT_RS16235	0.68	-0.1
3,686,511	+		BPHYT_RS16235	0.68	-2.2
3,686,511	+		BPHYT_RS16235	0.68	+0.0
3,686,512	-		BPHYT_RS16235	0.68	-1.4
3,686,610	+		BPHYT_RS16235	0.76	+0.5
3,686,610	+		BPHYT_RS16235	0.76	+0.0
3,686,610	+		BPHYT_RS16235	0.76	-0.8
3,686,610	+		BPHYT_RS16235	0.76	+0.1
3,686,610	+		BPHYT_RS16235	0.76	-0.3
3,686,610	+		BPHYT_RS16235	0.76	-0.3
3,686,610	+		BPHYT_RS16235	0.76	-1.6
3,686,611	-		BPHYT_RS16235	0.76	+3.8
3,686,611	-		BPHYT_RS16235	0.76	+1.6
3,686,611	-		BPHYT_RS16235	0.76	-0.1
3,686,611	-		BPHYT_RS16235	0.76	-0.1
3,686,611	-		BPHYT_RS16235	0.76	-1.2
3,686,611	-		BPHYT_RS16235	0.76	-0.3
3,686,737	-		BPHYT_RS16235	0.86	-1.7
3,686,783	+				+0.3
3,686,783	+				+1.5
3,686,783	+				+2.8
3,686,784	-				-0.7
3,686,808	+				+1.2
3,686,808	+				+0.2
3,686,810	+				+1.5
3,686,810	+				-2.1
3,686,811	-				+0.5
3,686,811	-				-0.5
3,686,811	-				+0.7
3,686,811	-				-2.1
3,686,811	-				-3.0
3,686,811	-				+0.1
3,686,865	+				-2.4
3,686,865	+				-0.4
3,686,904	+				+0.5
3,686,904	+				+0.6
3,686,905	-				+1.7
3,686,905	-				-0.0
3,688,182	-		BPHYT_RS16245	0.10	+6.7
3,688,389	-		BPHYT_RS16245	0.28	+6.5
3,688,389	-		BPHYT_RS16245	0.28	+7.9
3,688,611	-		BPHYT_RS16245	0.46	+6.5
3,688,770	-		BPHYT_RS16245	0.60	+6.0
3,688,915	-		BPHYT_RS16245	0.72	+6.8
3,688,963	-		BPHYT_RS16245	0.76	+6.8