Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15640

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,545,357	+				+1.5
3,545,423	+		BPHYT_RS15635	0.36	+1.5
3,545,644	-				+1.5
3,545,648	-				-1.9
3,545,669	+				+0.5
3,545,669	+				+0.2
3,545,669	+				-0.1
3,545,774	+				-2.0
3,545,774	+				-1.0
3,545,774	+				-1.8
3,545,775	-				-0.6
3,545,775	-				-2.6
3,545,775	-				-0.3
3,545,961	+		BPHYT_RS15640	0.11	-0.2
3,545,961	+		BPHYT_RS15640	0.11	-0.2
3,545,961	+		BPHYT_RS15640	0.11	-2.0
3,545,968	+		BPHYT_RS15640	0.12	-1.1
3,546,218	-		BPHYT_RS15640	0.27	-1.1
3,546,218	-		BPHYT_RS15640	0.27	-1.1
3,546,237	-		BPHYT_RS15640	0.29	-1.5
3,546,306	+		BPHYT_RS15640	0.33	-2.0
3,546,383	+		BPHYT_RS15640	0.38	-2.1
3,546,383	+		BPHYT_RS15640	0.38	-1.5
3,546,383	+		BPHYT_RS15640	0.38	-3.5
3,546,383	+		BPHYT_RS15640	0.38	-2.0
3,546,384	-				+1.5
3,546,384	-		BPHYT_RS15640	0.38	-0.4
3,546,384	-		BPHYT_RS15640	0.38	-1.0
3,546,389	+		BPHYT_RS15640	0.38	+0.8
3,546,390	-		BPHYT_RS15640	0.38	-2.3
3,546,390	-		BPHYT_RS15640	0.38	+0.9
3,546,395	-		BPHYT_RS15640	0.38	-4.6
3,546,395	-		BPHYT_RS15640	0.38	+0.5
3,546,463	+		BPHYT_RS15640	0.43	-1.7
3,546,507	-		BPHYT_RS15640	0.45	-2.2
3,546,680	+		BPHYT_RS15640	0.56	-1.4
3,546,681	-		BPHYT_RS15640	0.56	-1.6
3,546,681	-		BPHYT_RS15640	0.56	-2.1
3,546,691	+		BPHYT_RS15640	0.57	-2.2
3,546,806	+		BPHYT_RS15640	0.64	-2.4
3,546,806	+		BPHYT_RS15640	0.64	-3.8
3,546,807	-		BPHYT_RS15640	0.64	-1.2
3,547,101	-		BPHYT_RS15640	0.83	-1.6
3,547,114	-		BPHYT_RS15640	0.83	+0.5
3,547,181	+		BPHYT_RS15640	0.88	-2.5
3,547,185	-		BPHYT_RS15640	0.88	-2.4
3,547,185	-		BPHYT_RS15640	0.88	-4.2
3,547,825	+		BPHYT_RS15645	0.39	-1.4
3,547,825	+		BPHYT_RS15645	0.39	-1.3
3,547,826	-		BPHYT_RS15645	0.40	-1.4
3,547,826	-		BPHYT_RS15645	0.40	-0.7
3,547,826	-		BPHYT_RS15645	0.40	+3.1
3,547,828	-		BPHYT_RS15645	0.40	-1.3
3,547,871	-		BPHYT_RS15645	0.45	-0.9
3,547,931	+		BPHYT_RS15645	0.51	-1.3
3,547,952	-		BPHYT_RS15645	0.54	-1.0
3,548,100	-		BPHYT_RS15645	0.70	-2.2
3,548,100	-		BPHYT_RS15645	0.70	+3.8
3,548,100	-		BPHYT_RS15645	0.70	-1.7
3,548,265	+		BPHYT_RS15645	0.88	-2.8
3,548,311	+				-1.3