Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15450

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,507,064	+				-1.0
3,507,149	-				-1.8
3,507,168	+				-1.1
3,507,172	+				-1.3
3,507,174	+				-2.0
3,507,281	+				-2.5
3,507,281	+				-2.2
3,507,344	+				-1.2
3,507,373	+				-0.3
3,507,373	+				-2.7
3,507,505	-				+1.6
3,507,531	-				+2.1
3,507,533	-				-0.9
3,507,582	+				-0.2
3,507,700	+				-2.2
3,507,700	+				-2.2
3,507,700	+				-2.9
3,507,738	+				-2.7
3,507,739	-				+1.3
3,507,739	-				+2.0
3,507,739	-				+2.6
3,507,739	-				+0.8
3,507,754	+				-4.0
3,507,754	+				-3.2
3,507,775	+				-2.9
3,507,775	+				-1.9
3,507,776	-				+4.9
3,507,776	-				+1.4
3,507,776	-				+3.6
3,507,776	-				+4.6
3,507,878	-				+1.4
3,507,878	-				+0.8
3,507,879	+				+2.0
3,507,879	+				+1.4
3,507,880	-				+2.2
3,507,888	-				+1.7
3,507,888	-				-0.2
3,508,000	+		BPHYT_RS15450	0.13	+1.9
3,508,000	+		BPHYT_RS15450	0.13	+1.1
3,508,001	-		BPHYT_RS15450	0.13	+2.5
3,508,001	-		BPHYT_RS15450	0.13	+2.2
3,508,126	+		BPHYT_RS15450	0.25	+2.6
3,508,151	-		BPHYT_RS15450	0.27	+1.0
3,508,151	-		BPHYT_RS15450	0.27	+4.0
3,508,174	+		BPHYT_RS15450	0.29	-1.9
3,508,174	+		BPHYT_RS15450	0.29	+2.3
3,508,214	+		BPHYT_RS15450	0.33	+1.7
3,508,214	+		BPHYT_RS15450	0.33	+1.2
3,508,269	+		BPHYT_RS15450	0.38	+1.6
3,508,270	-		BPHYT_RS15450	0.39	+0.8
3,508,318	-		BPHYT_RS15450	0.43	+3.5
3,508,323	+		BPHYT_RS15450	0.44	+2.1
3,508,324	-		BPHYT_RS15450	0.44	+1.8
3,508,422	-		BPHYT_RS15450	0.53	+0.7
3,508,422	-		BPHYT_RS15450	0.53	+1.5
3,508,444	+		BPHYT_RS15450	0.55	+1.0
3,508,444	+		BPHYT_RS15450	0.55	+3.3
3,508,638	+		BPHYT_RS15450	0.73	+0.0
3,508,638	+		BPHYT_RS15450	0.73	-2.3
3,508,638	+		BPHYT_RS15450	0.73	-3.3
3,508,638	+		BPHYT_RS15450	0.73	+1.1
3,508,638	+		BPHYT_RS15450	0.73	-0.8
3,508,639	-		BPHYT_RS15450	0.73	+1.8
3,508,639	-		BPHYT_RS15450	0.73	+1.3
3,508,639	-		BPHYT_RS15450	0.73	+1.7
3,508,642	+		BPHYT_RS15450	0.74	-0.2
3,508,642	+		BPHYT_RS15450	0.74	-0.5
3,508,742	-		BPHYT_RS15450	0.83	+1.7
3,508,873	-				+1.6
3,508,910	+				-0.1
3,508,910	+				+0.4
3,508,964	+				+2.0
3,508,965	-				+1.2
3,509,123	-		BPHYT_RS15455	0.29	+1.9
3,509,212	+		BPHYT_RS15455	0.42	+1.4
3,509,263	+		BPHYT_RS15455	0.50	+2.6
3,509,289	+				+1.7
3,509,313	-		BPHYT_RS15455	0.57	+2.3
3,509,419	+		BPHYT_RS15455	0.73	+0.2
3,509,424	+		BPHYT_RS15455	0.74	+2.2
3,509,434	+		BPHYT_RS15455	0.75	+1.5
3,509,560	+				+1.8
3,509,592	-				+0.5
3,509,704	+				-2.0
3,509,709	+				+0.4
3,509,742	+				+0.6
3,509,789	+		BPHYT_RS15460	0.14	-0.7
3,509,790	-		BPHYT_RS15460	0.15	+0.3
3,509,790	-		BPHYT_RS15460	0.15	+0.3
3,509,790	-		BPHYT_RS15460	0.15	+0.5
3,509,792	+		BPHYT_RS15460	0.15	+1.4
3,509,792	+		BPHYT_RS15460	0.15	-0.4
3,509,792	+		BPHYT_RS15460	0.15	+1.0
3,509,793	-		BPHYT_RS15460	0.16	+0.8
3,509,816	-		BPHYT_RS15460	0.23	+0.5
3,509,820	+		BPHYT_RS15460	0.24	+2.7
3,509,820	+		BPHYT_RS15460	0.24	+0.5
3,509,922	+		BPHYT_RS15460	0.58	+2.5