Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14190

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,238,695	-		BPHYT_RS14180	0.31	-2.0
3,238,753	-		BPHYT_RS14180	0.42	+0.2
3,238,983	-		BPHYT_RS14180	0.87	+0.5
3,239,074	+				-1.2
3,239,074	+				-0.6
3,239,075	-				+0.0
3,239,095	+				+3.4
3,239,231	-		BPHYT_RS14185	0.34	+1.5
3,239,544	-				+0.2
3,239,554	-				+0.2
3,239,554	-				-0.4
3,239,590	-				-1.1
3,239,657	-				-0.3
3,239,669	+				+2.1
3,239,670	-				+4.1
3,239,670	-				+0.7
3,239,696	+				+2.7
3,239,722	+				-2.2
3,239,796	-				-2.2
3,239,798	+				+0.2
3,239,799	-				-3.3
3,239,799	-				-3.5
3,239,939	-				-1.1
3,240,260	+		BPHYT_RS14190	0.17	-3.5
3,240,261	-		BPHYT_RS14190	0.17	-2.8
3,240,261	-		BPHYT_RS14190	0.17	-2.0
3,240,365	+		BPHYT_RS14190	0.21	-2.6
3,240,366	-		BPHYT_RS14190	0.21	+6.0
3,240,366	-		BPHYT_RS14190	0.21	-2.3
3,240,366	-		BPHYT_RS14190	0.21	-1.3
3,240,407	+		BPHYT_RS14190	0.22	-1.4
3,240,736	-		BPHYT_RS14190	0.32	-1.9
3,240,736	-		BPHYT_RS14190	0.32	-2.6
3,240,737	+		BPHYT_RS14190	0.32	-4.5
3,240,794	+		BPHYT_RS14190	0.34	-2.8
3,240,795	-		BPHYT_RS14190	0.34	-4.0
3,240,867	+		BPHYT_RS14190	0.36	-3.1
3,241,313	+		BPHYT_RS14190	0.50	-3.6
3,241,319	+		BPHYT_RS14190	0.50	-2.8
3,241,320	-		BPHYT_RS14190	0.50	-2.8
3,241,368	-		BPHYT_RS14190	0.51	-3.6
3,241,473	-		BPHYT_RS14190	0.55	-4.6
3,241,506	+		BPHYT_RS14190	0.56	-2.4
3,241,632	-		BPHYT_RS14190	0.60	-1.8
3,242,134	-		BPHYT_RS14190	0.75	-3.8
3,242,147	+		BPHYT_RS14190	0.75	-1.8
3,242,379	+		BPHYT_RS14190	0.82	-2.8
3,242,382	-		BPHYT_RS14190	0.83	-5.1
3,242,618	+		BPHYT_RS14190	0.90	-2.1
3,242,619	-		BPHYT_RS14190	0.90	-0.9
3,242,757	-				-2.6
3,242,825	+				-1.5
3,242,826	-				-3.5
3,242,826	-				-1.1
3,242,966	+				-0.7
3,242,966	+				-2.6
3,242,967	-				+2.2
3,242,967	-				+0.2
3,242,967	-				+0.1
3,242,967	-				+0.3
3,243,003	+				-1.5
3,243,003	+				-2.0
3,243,004	-				+0.5
3,243,235	-				-1.6
3,243,565	+		BPHYT_RS14195	0.34	-2.9
3,243,732	+		BPHYT_RS14195	0.49	-1.5
3,243,816	+		BPHYT_RS14195	0.56	-3.1