Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13655

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
3,110,813	+		BPHYT_RS13645	0.73	-1.3
3,110,813	+		BPHYT_RS13645	0.73	-0.5
3,110,813	+		BPHYT_RS13645	0.73	-2.3
3,110,813	+		BPHYT_RS13645	0.73	-3.0
3,110,814	-		BPHYT_RS13645	0.73	+0.3
3,110,814	-		BPHYT_RS13645	0.73	-1.5
3,110,862	+		BPHYT_RS13645	0.76	-1.5
3,110,864	+		BPHYT_RS13645	0.76	-1.8
3,110,864	+		BPHYT_RS13645	0.76	-2.5
3,110,865	-		BPHYT_RS13645	0.76	-1.9
3,110,865	-		BPHYT_RS13645	0.76	-0.7
3,110,865	-		BPHYT_RS13645	0.76	+0.7
3,110,889	-		BPHYT_RS13645	0.77	-2.0
3,111,006	-		BPHYT_RS13645	0.83	-1.6
3,111,006	-		BPHYT_RS13645	0.83	+2.1
3,111,017	+		BPHYT_RS13645	0.84	+2.3
3,111,017	+		BPHYT_RS13645	0.84	-1.6
3,111,018	-		BPHYT_RS13645	0.84	+0.5
3,111,020	+		BPHYT_RS13645	0.84	-1.5
3,111,020	+		BPHYT_RS13645	0.84	-2.2
3,111,021	-		BPHYT_RS13645	0.84	-1.9
3,111,021	-		BPHYT_RS13645	0.84	-1.5
3,111,086	+		BPHYT_RS13645	0.87	+1.3
3,111,086	+		BPHYT_RS13645	0.87	-1.7
3,111,189	+				-0.1
3,111,288	-				-3.4
3,111,288	-				-2.9
3,111,316	+				-1.3
3,111,316	+				+0.2
3,111,317	-				-1.1
3,111,362	+				-3.0
3,111,362	+				-1.3
3,111,363	-				+0.3
3,111,363	-				-2.0
3,111,363	-				-0.8
3,111,363	-				+0.4
3,111,363	-				+0.7
3,111,363	-				-2.1
3,111,434	+				-1.1
3,111,476	-				+0.7
3,111,509	-				-0.8
3,111,534	+				+0.4
3,111,671	-				+1.0
3,111,671	-				-2.2
3,111,671	-				-0.4
3,111,671	-				-0.7
3,111,698	+				+0.2
3,111,705	-				+0.7
3,111,754	+				-1.3
3,111,754	+				+0.3
3,111,754	+				-0.5
3,111,755	-				+0.5
3,111,839	-				+2.1
3,111,839	-				+2.2
3,111,964	+				+3.3
3,112,017	+		BPHYT_RS13655	0.10	+2.2
3,112,165	+		BPHYT_RS13655	0.17	+3.0
3,112,276	+		BPHYT_RS13655	0.22	+2.0
3,112,277	-		BPHYT_RS13655	0.22	+2.1
3,112,277	-		BPHYT_RS13655	0.22	+2.5
3,112,499	-		BPHYT_RS13655	0.32	+2.5
3,112,791	+		BPHYT_RS13655	0.45	+6.3
3,112,791	+		BPHYT_RS13655	0.45	+3.4
3,112,791	+		BPHYT_RS13655	0.45	+2.4
3,112,792	-		BPHYT_RS13655	0.45	+5.3
3,112,792	-		BPHYT_RS13655	0.45	+1.7
3,112,792	-		BPHYT_RS13655	0.45	+2.5
3,112,792	-		BPHYT_RS13655	0.45	+1.8
3,112,792	-		BPHYT_RS13655	0.45	-1.5
3,112,792	-		BPHYT_RS13655	0.45	+2.7
3,112,792	-		BPHYT_RS13655	0.45	+3.0
3,112,927	-		BPHYT_RS13655	0.51	+1.8
3,113,095	-		BPHYT_RS13655	0.58	+2.8
3,113,121	+		BPHYT_RS13655	0.59	+0.8
3,113,121	+		BPHYT_RS13655	0.59	+0.7
3,113,122	-		BPHYT_RS13655	0.59	+2.4
3,113,181	+		BPHYT_RS13655	0.62	+1.7
3,113,181	+		BPHYT_RS13655	0.62	+2.4
3,113,281	-		BPHYT_RS13655	0.67	+2.2
3,113,281	-		BPHYT_RS13655	0.67	+2.3
3,113,284	+		BPHYT_RS13655	0.67	+2.4
3,113,284	+		BPHYT_RS13655	0.67	+1.9
3,113,284	+		BPHYT_RS13655	0.67	+1.7
3,113,284	+		BPHYT_RS13655	0.67	+1.6
3,113,285	-		BPHYT_RS13655	0.67	+2.2
3,113,367	+		BPHYT_RS13655	0.70	+1.9
3,113,368	-		BPHYT_RS13655	0.70	+1.5
3,113,416	+		BPHYT_RS13655	0.73	+2.4
3,113,417	-		BPHYT_RS13655	0.73	+2.6
3,113,417	-		BPHYT_RS13655	0.73	+0.7
3,113,419	-		BPHYT_RS13655	0.73	+3.0
3,113,419	-		BPHYT_RS13655	0.73	+2.0
3,113,419	-		BPHYT_RS13655	0.73	+2.0
3,113,441	+		BPHYT_RS13655	0.74	+2.2
3,113,505	+		BPHYT_RS13655	0.77	+1.9
3,113,505	+		BPHYT_RS13655	0.77	+2.7
3,113,505	+		BPHYT_RS13655	0.77	+1.7
3,113,505	+		BPHYT_RS13655	0.77	+2.3
3,113,506	-		BPHYT_RS13655	0.77	+0.7
3,113,506	-		BPHYT_RS13655	0.77	+2.7
3,113,506	-		BPHYT_RS13655	0.77	+2.1
3,113,565	+		BPHYT_RS13655	0.79	+2.4
3,114,011	-				+1.1
3,114,011	-				+1.3
3,114,014	-				+2.4
3,114,025	+				+2.0
3,114,092	-				+1.3
3,114,092	-				+0.5
3,114,244	+		BPHYT_RS13660	0.44	+1.0
3,114,244	+		BPHYT_RS13660	0.44	+2.3
3,114,245	-		BPHYT_RS13660	0.44	-0.0
3,114,245	-		BPHYT_RS13660	0.44	+1.1
3,114,377	-		BPHYT_RS13660	0.81	-1.7
3,114,525	+				+2.1
3,114,525	+				+1.3
3,114,525	+				+3.6
3,114,526	-				-2.4
3,114,526	-				-1.3
3,114,528	+				-0.7
3,114,692	+		BPHYT_RS13665	0.18	+2.2
3,114,970	-		BPHYT_RS13665	0.48	-0.3
3,114,970	-		BPHYT_RS13665	0.48	-0.6
3,114,986	+		BPHYT_RS13665	0.50	+0.8