Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12595

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12590 and BPHYT_RS12595 are separated by 161 nucleotidesBPHYT_RS12595 and BPHYT_RS12600 are separated by 305 nucleotides BPHYT_RS12590: BPHYT_RS12590 - dual-specificity RNA methyltransferase RlmN, at 2,874,337 to 2,875,488 _RS12590 BPHYT_RS12595: BPHYT_RS12595 - nucleoside diphosphate kinase, at 2,875,650 to 2,876,075 _RS12595 BPHYT_RS12600: BPHYT_RS12600 - membrane protein, at 2,876,381 to 2,877,079 _RS12600 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2874.657 kb on - strand, within BPHYT_RS12590at 2875.197 kb on - strand, within BPHYT_RS12590at 2875.368 kb on - strand, within BPHYT_RS12590at 2875.585 kb on - strandat 2875.660 kb on + strandat 2875.661 kb on - strandat 2876.126 kb on + strandat 2876.126 kb on + strandat 2876.141 kb on + strandat 2876.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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2,874,657 - BPHYT_RS12590 0.28 +1.0
2,875,197 - BPHYT_RS12590 0.75 +0.9
2,875,368 - BPHYT_RS12590 0.89 -1.4
2,875,585 - +0.7
2,875,660 + +4.3
2,875,661 - +0.6
2,876,126 + +0.3
2,876,126 + -3.1
2,876,141 + +0.4
2,876,161 + +1.5

Or see this region's nucleotide sequence