Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12220

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
2,789,047	+		BPHYT_RS12210	0.79	+0.2
2,789,048	-		BPHYT_RS12210	0.79	-0.5
2,789,053	+		BPHYT_RS12210	0.79	-0.1
2,789,054	-		BPHYT_RS12210	0.79	-3.8
2,789,372	-				-0.7
2,789,425	+		BPHYT_RS12215	0.11	+0.1
2,789,425	+		BPHYT_RS12215	0.11	-1.1
2,789,695	+		BPHYT_RS12215	0.68	-0.8
2,789,695	+		BPHYT_RS12215	0.68	+0.1
2,789,696	-		BPHYT_RS12215	0.68	+0.3
2,789,696	-		BPHYT_RS12215	0.68	+0.3
2,789,704	+		BPHYT_RS12215	0.70	-2.8
2,789,704	+		BPHYT_RS12215	0.70	-0.8
2,789,786	-				-0.7
2,790,767	+		BPHYT_RS12220	0.40	-0.4
2,790,767	+		BPHYT_RS12220	0.40	+0.7
2,790,767	+		BPHYT_RS12220	0.40	-2.0
2,791,139	+		BPHYT_RS12220	0.59	-0.5
2,791,140	-		BPHYT_RS12220	0.59	-0.5
2,791,470	+		BPHYT_RS12220	0.76	+1.4
2,791,470	+		BPHYT_RS12220	0.76	-0.4
2,791,470	+		BPHYT_RS12220	0.76	-0.3
2,791,470	+		BPHYT_RS12220	0.76	+0.3
2,791,471	-		BPHYT_RS12220	0.76	+0.5
2,792,063	+				+1.1
2,792,064	-				-0.5
2,792,187	-				+0.5
2,792,691	+		BPHYT_RS12225	0.39	+0.6
2,792,692	-		BPHYT_RS12225	0.39	-0.2
2,792,692	-		BPHYT_RS12225	0.39	+1.1
2,792,906	-		BPHYT_RS12225	0.60	+0.2