Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11790

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11785 and BPHYT_RS11790 are separated by 56 nucleotidesBPHYT_RS11790 and BPHYT_RS11795 are separated by 53 nucleotidesBPHYT_RS11795 and BPHYT_RS11800 overlap by 8 nucleotides BPHYT_RS11785: BPHYT_RS11785 - formyl-CoA transferase, at 2,672,112 to 2,673,344 _RS11785 BPHYT_RS11790: BPHYT_RS11790 - fumarylacetoacetase, at 2,673,401 to 2,674,723 _RS11790 BPHYT_RS11795: BPHYT_RS11795 - membrane protein, at 2,674,777 to 2,675,151 _RS11795 BPHYT_RS11800: BPHYT_RS11800 - acetate permease, at 2,675,144 to 2,676,730 _RS11800 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -3 -2 -1 0 1at 2673.495 kb on + strandat 2673.827 kb on + strand, within BPHYT_RS11790at 2673.829 kb on + strand, within BPHYT_RS11790at 2673.830 kb on - strand, within BPHYT_RS11790at 2674.302 kb on - strand, within BPHYT_RS11790at 2675.047 kb on - strand, within BPHYT_RS11795at 2675.463 kb on - strand, within BPHYT_RS11800at 2675.463 kb on - strand, within BPHYT_RS11800at 2675.654 kb on + strand, within BPHYT_RS11800at 2675.688 kb on - strand, within BPHYT_RS11800

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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2,673,495 + -0.1
2,673,827 + BPHYT_RS11790 0.32 +0.3
2,673,829 + BPHYT_RS11790 0.32 -3.2
2,673,830 - BPHYT_RS11790 0.32 -1.5
2,674,302 - BPHYT_RS11790 0.68 +0.5
2,675,047 - BPHYT_RS11795 0.72 +0.4
2,675,463 - BPHYT_RS11800 0.20 +0.7
2,675,463 - BPHYT_RS11800 0.20 -0.0
2,675,654 + BPHYT_RS11800 0.32 -1.4
2,675,688 - BPHYT_RS11800 0.34 +0.2

Or see this region's nucleotide sequence