Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08460

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08455 and BPHYT_RS08460 are separated by 185 nucleotidesBPHYT_RS08460 and BPHYT_RS08465 are separated by 81 nucleotides BPHYT_RS08455: BPHYT_RS08455 - ribonuclease R, at 1,932,953 to 1,935,454 _RS08455 BPHYT_RS08460: BPHYT_RS08460 - 23S rRNA (guanosine-2'-O-)-methyltransferase, at 1,935,640 to 1,936,383 _RS08460 BPHYT_RS08465: BPHYT_RS08465 - ribose-5-phosphate isomerase A, at 1,936,465 to 1,937,160 _RS08465 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1934.645 kb on + strand, within BPHYT_RS08455at 1934.646 kb on - strand, within BPHYT_RS08455at 1934.729 kb on + strand, within BPHYT_RS08455at 1934.933 kb on + strand, within BPHYT_RS08455at 1934.963 kb on + strand, within BPHYT_RS08455at 1935.065 kb on + strand, within BPHYT_RS08455at 1935.492 kb on + strandat 1935.492 kb on + strandat 1935.493 kb on - strandat 1935.493 kb on - strandat 1935.569 kb on + strandat 1935.585 kb on + strandat 1935.585 kb on + strandat 1935.633 kb on - strandat 1935.633 kb on - strandat 1935.662 kb on - strandat 1935.687 kb on + strandat 1936.434 kb on + strandat 1937.271 kb on - strandat 1937.284 kb on - strandat 1937.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,934,645 + BPHYT_RS08455 0.68 +2.1
1,934,646 - BPHYT_RS08455 0.68 -0.6
1,934,729 + BPHYT_RS08455 0.71 -0.1
1,934,933 + BPHYT_RS08455 0.79 +2.2
1,934,963 + BPHYT_RS08455 0.80 +1.1
1,935,065 + BPHYT_RS08455 0.84 +0.7
1,935,492 + +0.9
1,935,492 + -0.0
1,935,493 - +1.5
1,935,493 - +1.1
1,935,569 + +2.5
1,935,585 + -1.0
1,935,585 + +1.2
1,935,633 - -0.0
1,935,633 - -3.3
1,935,662 - +0.4
1,935,687 + +1.1
1,936,434 + +0.2
1,937,271 - +2.1
1,937,284 - +0.0
1,937,284 - +1.1

Or see this region's nucleotide sequence