Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06545

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
1,484,485	+				-1.1
1,484,485	+				-0.6
1,484,486	-				-0.6
1,484,601	+		BPHYT_RS06540	0.21	+0.6
1,484,602	-		BPHYT_RS06540	0.21	+0.8
1,484,602	-		BPHYT_RS06540	0.21	+0.2
1,484,811	+		BPHYT_RS06540	0.58	+0.5
1,484,811	+		BPHYT_RS06540	0.58	+0.4
1,484,811	+		BPHYT_RS06540	0.58	-0.0
1,484,811	+		BPHYT_RS06540	0.58	+0.1
1,484,838	-		BPHYT_RS06540	0.63	+1.7
1,484,862	+		BPHYT_RS06540	0.67	+3.7
1,484,862	+		BPHYT_RS06540	0.67	-2.0
1,484,863	-		BPHYT_RS06540	0.68	-2.9
1,484,863	-		BPHYT_RS06540	0.68	+0.2
1,484,975	+		BPHYT_RS06540	0.87	-0.9
1,485,077	+				+0.7
1,485,113	+				+2.2
1,485,162	+				-0.2
1,485,163	-				+0.7
1,485,163	-				-0.4
1,485,224	-				-0.7
1,485,224	-				-1.8
1,485,253	+				-1.5
1,485,274	+				-0.3
1,485,274	+				+1.3
1,485,275	-				-4.7
1,485,275	-				-3.2
1,485,412	+				-3.3
1,485,551	+				-0.7
1,485,569	+				-0.2
1,485,725	+		BPHYT_RS06545	0.18	-1.2
1,485,725	+		BPHYT_RS06545	0.18	-2.2
1,485,725	+		BPHYT_RS06545	0.18	-2.8
1,485,971	+		BPHYT_RS06545	0.32	-4.1
1,486,004	+		BPHYT_RS06545	0.34	-1.6
1,486,004	+		BPHYT_RS06545	0.34	-4.6
1,486,079	+		BPHYT_RS06545	0.38	-4.4
1,486,080	-		BPHYT_RS06545	0.38	-0.7
1,486,085	+		BPHYT_RS06545	0.38	-2.8
1,486,085	+		BPHYT_RS06545	0.38	-1.4
1,486,085	+		BPHYT_RS06545	0.38	-2.9
1,486,085	+		BPHYT_RS06545	0.38	-0.7
1,486,085	+		BPHYT_RS06545	0.38	-1.5
1,486,162	+		BPHYT_RS06545	0.43	-2.8
1,486,165	+		BPHYT_RS06545	0.43	-3.2
1,486,165	+		BPHYT_RS06545	0.43	-3.2
1,486,241	+		BPHYT_RS06545	0.47	-2.1
1,486,816	+		BPHYT_RS06545	0.80	-5.4
1,486,844	+		BPHYT_RS06545	0.81	-3.2
1,486,931	+		BPHYT_RS06545	0.86	-3.6
1,486,943	+		BPHYT_RS06545	0.87	-2.2
1,486,943	+		BPHYT_RS06545	0.87	-0.8
1,486,943	+		BPHYT_RS06545	0.87	-3.7
1,486,943	+		BPHYT_RS06545	0.87	-3.3
1,487,166	+				-2.7
1,487,363	+		BPHYT_RS06550	0.16	+1.3
1,487,599	+		BPHYT_RS06550	0.64	+1.5
1,487,701	+		BPHYT_RS06550	0.85	-2.3
1,487,818	+				-0.4
1,487,840	+				-1.2
1,487,840	+				+0.1
1,487,840	+				-1.1
1,487,840	+				+1.3
1,487,840	+				+1.9
1,487,841	-				-2.8
1,487,841	-				-4.2
1,487,841	-				-3.4
1,487,841	-				-1.8
1,487,841	-				-2.7
1,487,842	+				-0.4
1,487,842	+				-1.2
1,487,842	+				-0.3
1,487,842	+				+0.7
1,487,842	+				-0.9
1,487,843	-				-3.1
1,487,843	-				-2.7
1,488,157	+		BPHYT_RS06555	0.26	-3.4
1,488,158	-		BPHYT_RS06555	0.26	-2.1