Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05585

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Deoxyadenosine 5-monophosphate 5 mM (C)
1,280,395	+		BPHYT_RS05575	0.71	-1.5
1,280,396	-		BPHYT_RS05575	0.71	+0.3
1,280,396	-		BPHYT_RS05575	0.71	-1.4
1,280,396	-		BPHYT_RS05575	0.71	+0.4
1,280,492	+		BPHYT_RS05575	0.78	+0.6
1,280,492	+		BPHYT_RS05575	0.78	+1.1
1,280,493	-		BPHYT_RS05575	0.78	+0.1
1,280,493	-		BPHYT_RS05575	0.78	-2.1
1,280,493	-		BPHYT_RS05575	0.78	+0.8
1,280,493	-		BPHYT_RS05575	0.78	+1.7
1,280,493	-				-1.7
1,280,717	+				+0.4
1,280,717	+				+0.4
1,280,718	-				+0.2
1,280,718	-				+0.0
1,280,718	-				-0.1
1,280,718	-				-0.6
1,280,718	-				+0.5
1,280,718	-				+0.3
1,280,720	-				-0.4
1,280,829	+				+0.3
1,280,829	+				-1.3
1,280,830	-				+0.1
1,280,903	+				+1.2
1,280,909	+				-0.2
1,280,909	+				-0.8
1,280,910	-				+0.6
1,280,920	-				+0.3
1,280,920	-				-1.3
1,280,920	-				+0.0
1,280,920	-				-2.7
1,280,920	-				-2.1
1,281,030	-		BPHYT_RS05580	0.44	-0.2
1,281,030	-		BPHYT_RS05580	0.44	-0.5
1,281,170	-				+0.0
1,281,170	-				+0.3
1,281,231	-				+0.3
1,281,237	+				+1.1
1,281,238	-				-0.2
1,281,238	-				+1.4
1,281,269	-				-0.2
1,281,269	-				+0.7
1,281,269	-				+1.1
1,281,290	+				+1.2
1,281,291	-				-0.3
1,281,515	-		BPHYT_RS05585	0.39	-1.4
1,281,722	-				-2.0
1,281,722	-				+0.4
1,281,925	+		BPHYT_RS05590	0.11	-1.1
1,281,949	-		BPHYT_RS05590	0.13	+1.2
1,281,979	-		BPHYT_RS05590	0.15	+2.4
1,281,987	+		BPHYT_RS05590	0.16	+0.7
1,281,987	+				+1.0
1,281,987	+		BPHYT_RS05590	0.16	+0.0
1,281,988	-		BPHYT_RS05590	0.16	-0.4
1,281,991	-		BPHYT_RS05590	0.16	-0.8
1,281,991	-		BPHYT_RS05590	0.16	+0.1
1,282,077	+		BPHYT_RS05590	0.22	+0.3
1,282,156	-		BPHYT_RS05590	0.27	-2.2
1,282,299	+		BPHYT_RS05590	0.37	+0.1
1,282,299	+		BPHYT_RS05590	0.37	+0.6
1,282,300	-		BPHYT_RS05590	0.37	-0.2
1,282,404	+		BPHYT_RS05590	0.45	+1.8
1,282,404	+		BPHYT_RS05590	0.45	-0.9
1,282,405	-		BPHYT_RS05590	0.45	-1.0
1,282,406	+		BPHYT_RS05590	0.45	-0.1
1,282,407	-		BPHYT_RS05590	0.45	+0.8
1,282,447	-		BPHYT_RS05590	0.48	-1.0
1,282,447	-		BPHYT_RS05590	0.48	-1.3