Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04785

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04775 and BPHYT_RS04780 are separated by 77 nucleotidesBPHYT_RS04780 and BPHYT_RS04785 are separated by 11 nucleotidesBPHYT_RS04785 and BPHYT_RS04790 are separated by 3 nucleotides BPHYT_RS04775: BPHYT_RS04775 - 2-deoxy-D-ribonate 3-dehydrogenase (from data), at 1,102,575 to 1,103,366 _RS04775 BPHYT_RS04780: BPHYT_RS04780 - cobalamin biosynthesis protein CbiX, at 1,103,444 to 1,103,827 _RS04780 BPHYT_RS04785: BPHYT_RS04785 - permease, at 1,103,839 to 1,104,987 _RS04785 BPHYT_RS04790: BPHYT_RS04790 - permease, at 1,104,991 to 1,106,088 _RS04790 Position (kb) 1103 1104 1105Strain fitness (log2 ratio) -1 0 1at 1102.941 kb on + strand, within BPHYT_RS04775at 1103.584 kb on + strand, within BPHYT_RS04780

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,102,941 + BPHYT_RS04775 0.46 +1.4
1,103,584 + BPHYT_RS04780 0.36 -1.6

Or see this region's nucleotide sequence