Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04000

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03995 and BPHYT_RS04000 are separated by 83 nucleotidesBPHYT_RS04000 and BPHYT_RS04005 are separated by 5 nucleotides BPHYT_RS03995: BPHYT_RS03995 - protein tyrosine kinase, at 908,970 to 911,204 _RS03995 BPHYT_RS04000: BPHYT_RS04000 - GDP-mannose 4,6-dehydratase, at 911,288 to 912,406 _RS04000 BPHYT_RS04005: BPHYT_RS04005 - GDP-L-fucose synthase, at 912,412 to 913,371 _RS04005 Position (kb) 911 912 913Strain fitness (log2 ratio) -1 0 1 2at 910.398 kb on + strand, within BPHYT_RS03995at 911.011 kb on - strandat 911.296 kb on + strandat 911.339 kb on + strandat 911.542 kb on + strand, within BPHYT_RS04000at 911.675 kb on + strand, within BPHYT_RS04000at 911.923 kb on + strand, within BPHYT_RS04000at 911.940 kb on - strand, within BPHYT_RS04000at 912.036 kb on - strand, within BPHYT_RS04000at 912.218 kb on + strand, within BPHYT_RS04000at 912.655 kb on + strand, within BPHYT_RS04005at 912.932 kb on - strand, within BPHYT_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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910,398 + BPHYT_RS03995 0.64 +0.6
911,011 - -0.4
911,296 + +2.1
911,339 + +0.6
911,542 + BPHYT_RS04000 0.23 -0.8
911,675 + BPHYT_RS04000 0.35 +1.8
911,923 + BPHYT_RS04000 0.57 +1.2
911,940 - BPHYT_RS04000 0.58 -1.1
912,036 - BPHYT_RS04000 0.67 +0.9
912,218 + BPHYT_RS04000 0.83 +0.5
912,655 + BPHYT_RS04005 0.25 -0.1
912,932 - BPHYT_RS04005 0.54 +1.4

Or see this region's nucleotide sequence