Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03805

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03800 and BPHYT_RS03805 overlap by 4 nucleotidesBPHYT_RS03805 and BPHYT_RS03810 are separated by 73 nucleotides BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705 _RS03800 BPHYT_RS03805: BPHYT_RS03805 - fumarylacetoacetase, at 858,702 to 860,012 _RS03805 BPHYT_RS03810: BPHYT_RS03810 - transposase, at 860,086 to 861,363 _RS03810 Position (kb) 858 859 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 857.798 kb on - strand, within BPHYT_RS03800at 857.833 kb on + strand, within BPHYT_RS03800at 857.833 kb on + strand, within BPHYT_RS03800at 857.989 kb on + strand, within BPHYT_RS03800at 858.094 kb on + strand, within BPHYT_RS03800at 858.202 kb on + strand, within BPHYT_RS03800at 858.217 kb on + strand, within BPHYT_RS03800at 858.217 kb on + strand, within BPHYT_RS03800at 858.218 kb on - strand, within BPHYT_RS03800at 858.321 kb on + strand, within BPHYT_RS03800at 858.322 kb on - strand, within BPHYT_RS03800at 858.369 kb on + strand, within BPHYT_RS03800at 858.369 kb on + strand, within BPHYT_RS03800at 858.369 kb on + strand, within BPHYT_RS03800at 858.484 kb on - strand, within BPHYT_RS03800at 858.484 kb on - strand, within BPHYT_RS03800at 858.543 kb on + strand, within BPHYT_RS03800at 858.544 kb on - strand, within BPHYT_RS03800at 858.656 kb on - strandat 858.874 kb on + strand, within BPHYT_RS03805at 858.874 kb on + strand, within BPHYT_RS03805at 859.287 kb on - strand, within BPHYT_RS03805at 859.431 kb on - strand, within BPHYT_RS03805at 859.431 kb on - strand, within BPHYT_RS03805at 859.488 kb on + strand, within BPHYT_RS03805at 859.488 kb on + strand, within BPHYT_RS03805at 859.488 kb on + strand, within BPHYT_RS03805at 859.488 kb on + strand, within BPHYT_RS03805at 859.489 kb on - strand, within BPHYT_RS03805at 859.614 kb on + strand, within BPHYT_RS03805at 859.721 kb on + strand, within BPHYT_RS03805at 859.721 kb on + strand, within BPHYT_RS03805at 859.721 kb on + strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.722 kb on - strand, within BPHYT_RS03805at 859.725 kb on + strand, within BPHYT_RS03805at 859.726 kb on - strand, within BPHYT_RS03805at 860.021 kb on + strandat 860.042 kb on - strandat 860.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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857,798 - BPHYT_RS03800 0.30 +0.8
857,833 + BPHYT_RS03800 0.33 -1.2
857,833 + BPHYT_RS03800 0.33 -0.6
857,989 + BPHYT_RS03800 0.45 +0.2
858,094 + BPHYT_RS03800 0.53 +0.8
858,202 + BPHYT_RS03800 0.61 +2.8
858,217 + BPHYT_RS03800 0.62 -0.5
858,217 + BPHYT_RS03800 0.62 -0.9
858,218 - BPHYT_RS03800 0.62 -0.0
858,321 + BPHYT_RS03800 0.70 +0.2
858,322 - BPHYT_RS03800 0.70 -0.1
858,369 + BPHYT_RS03800 0.74 -0.2
858,369 + BPHYT_RS03800 0.74 -0.8
858,369 + BPHYT_RS03800 0.74 -0.1
858,484 - BPHYT_RS03800 0.83 +0.9
858,484 - BPHYT_RS03800 0.83 +1.0
858,543 + BPHYT_RS03800 0.87 +0.1
858,544 - BPHYT_RS03800 0.88 -2.3
858,656 - -0.5
858,874 + BPHYT_RS03805 0.13 +0.5
858,874 + BPHYT_RS03805 0.13 -0.6
859,287 - BPHYT_RS03805 0.45 +1.9
859,431 - BPHYT_RS03805 0.56 +0.2
859,431 - BPHYT_RS03805 0.56 -0.1
859,488 + BPHYT_RS03805 0.60 +0.5
859,488 + BPHYT_RS03805 0.60 +0.2
859,488 + BPHYT_RS03805 0.60 +0.0
859,488 + BPHYT_RS03805 0.60 +1.5
859,489 - BPHYT_RS03805 0.60 +0.1
859,614 + BPHYT_RS03805 0.70 +0.2
859,721 + BPHYT_RS03805 0.78 +1.3
859,721 + BPHYT_RS03805 0.78 +0.6
859,721 + BPHYT_RS03805 0.78 -0.7
859,722 - BPHYT_RS03805 0.78 +1.5
859,722 - BPHYT_RS03805 0.78 -3.1
859,722 - BPHYT_RS03805 0.78 +0.1
859,722 - BPHYT_RS03805 0.78 -1.0
859,722 - BPHYT_RS03805 0.78 -0.5
859,722 - BPHYT_RS03805 0.78 +0.4
859,725 + BPHYT_RS03805 0.78 +0.2
859,726 - BPHYT_RS03805 0.78 -0.6
860,021 + -0.2
860,042 - +1.3
860,042 - -1.0

Or see this region's nucleotide sequence