Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03475

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03470 and BPHYT_RS03475 are separated by 429 nucleotidesBPHYT_RS03475 and BPHYT_RS03480 are separated by 398 nucleotides BPHYT_RS03470: BPHYT_RS03470 - LysR family transcriptional regulator, at 782,438 to 783,397 _RS03470 BPHYT_RS03475: BPHYT_RS03475 - catalase, at 783,827 to 785,281 _RS03475 BPHYT_RS03480: BPHYT_RS03480 - ferritin, at 785,680 to 786,177 _RS03480 Position (kb) 783 784 785 786Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 783.166 kb on + strand, within BPHYT_RS03470at 783.167 kb on - strand, within BPHYT_RS03470at 783.395 kb on + strandat 783.395 kb on + strandat 783.527 kb on - strandat 783.709 kb on + strandat 783.710 kb on - strandat 783.768 kb on + strandat 783.769 kb on - strandat 783.804 kb on + strandat 783.838 kb on + strandat 783.839 kb on - strandat 783.839 kb on - strandat 784.034 kb on - strand, within BPHYT_RS03475at 784.034 kb on - strand, within BPHYT_RS03475at 784.172 kb on + strand, within BPHYT_RS03475at 784.280 kb on + strand, within BPHYT_RS03475at 784.421 kb on + strand, within BPHYT_RS03475at 784.421 kb on + strand, within BPHYT_RS03475at 784.422 kb on - strand, within BPHYT_RS03475at 784.422 kb on - strand, within BPHYT_RS03475at 784.521 kb on + strand, within BPHYT_RS03475at 784.521 kb on + strand, within BPHYT_RS03475at 784.522 kb on - strand, within BPHYT_RS03475at 784.685 kb on + strand, within BPHYT_RS03475at 784.685 kb on + strand, within BPHYT_RS03475at 784.686 kb on - strand, within BPHYT_RS03475at 784.686 kb on - strandat 784.736 kb on + strand, within BPHYT_RS03475at 784.736 kb on + strand, within BPHYT_RS03475at 784.736 kb on + strand, within BPHYT_RS03475at 785.078 kb on + strand, within BPHYT_RS03475at 785.078 kb on + strand, within BPHYT_RS03475at 785.078 kb on + strand, within BPHYT_RS03475at 785.079 kb on - strand, within BPHYT_RS03475at 785.081 kb on + strand, within BPHYT_RS03475at 785.081 kb on + strand, within BPHYT_RS03475at 785.158 kb on + strandat 785.279 kb on + strandat 785.279 kb on + strandat 785.280 kb on - strandat 785.337 kb on + strandat 785.338 kb on - strandat 785.346 kb on + strandat 785.346 kb on + strandat 785.394 kb on - strandat 785.415 kb on + strandat 785.658 kb on - strandat 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.788 kb on + strand, within BPHYT_RS03480at 785.789 kb on - strand, within BPHYT_RS03480at 785.789 kb on - strand, within BPHYT_RS03480at 785.876 kb on - strand, within BPHYT_RS03480at 786.175 kb on + strandat 786.175 kb on + strandat 786.176 kb on - strandat 786.179 kb on + strandat 786.244 kb on - strandat 786.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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783,166 + BPHYT_RS03470 0.76 -1.8
783,167 - BPHYT_RS03470 0.76 +0.7
783,395 + -1.7
783,395 + -1.3
783,527 - -0.8
783,709 + -1.8
783,710 - -0.8
783,768 + +3.5
783,769 - -0.9
783,804 + +0.5
783,838 + +0.4
783,839 - +0.2
783,839 - -1.2
784,034 - BPHYT_RS03475 0.14 -1.8
784,034 - BPHYT_RS03475 0.14 -3.1
784,172 + BPHYT_RS03475 0.24 +0.0
784,280 + BPHYT_RS03475 0.31 +0.5
784,421 + BPHYT_RS03475 0.41 -1.4
784,421 + BPHYT_RS03475 0.41 -0.5
784,422 - BPHYT_RS03475 0.41 -0.3
784,422 - BPHYT_RS03475 0.41 +3.5
784,521 + BPHYT_RS03475 0.48 +0.7
784,521 + BPHYT_RS03475 0.48 +0.4
784,522 - BPHYT_RS03475 0.48 -1.6
784,685 + BPHYT_RS03475 0.59 -0.4
784,685 + BPHYT_RS03475 0.59 -0.8
784,686 - BPHYT_RS03475 0.59 -1.5
784,686 - +0.5
784,736 + BPHYT_RS03475 0.62 +0.0
784,736 + BPHYT_RS03475 0.62 -1.5
784,736 + BPHYT_RS03475 0.62 +0.6
785,078 + BPHYT_RS03475 0.86 -1.3
785,078 + BPHYT_RS03475 0.86 +1.3
785,078 + BPHYT_RS03475 0.86 +0.5
785,079 - BPHYT_RS03475 0.86 +1.2
785,081 + BPHYT_RS03475 0.86 -2.3
785,081 + BPHYT_RS03475 0.86 -0.5
785,158 + +1.8
785,279 + +1.6
785,279 + +0.9
785,280 - -0.6
785,337 + +1.1
785,338 - +2.1
785,346 + -0.1
785,346 + +0.7
785,394 - +0.1
785,415 + +0.0
785,658 - -3.3
785,788 + BPHYT_RS03480 0.22 -5.5
785,788 + BPHYT_RS03480 0.22 -6.6
785,788 + BPHYT_RS03480 0.22 -3.6
785,788 + BPHYT_RS03480 0.22 -2.8
785,789 - BPHYT_RS03480 0.22 -3.5
785,789 - BPHYT_RS03480 0.22 -4.0
785,876 - BPHYT_RS03480 0.39 -2.7
786,175 + +0.7
786,175 + -0.1
786,176 - -0.4
786,179 + +0.6
786,244 - +1.1
786,244 - +0.2

Or see this region's nucleotide sequence