Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03375

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03370 and BPHYT_RS03375 are separated by 15 nucleotidesBPHYT_RS03375 and BPHYT_RS03380 overlap by 1 nucleotides BPHYT_RS03370: BPHYT_RS03370 - NAD(P) transhydrogenase subunit alpha, at 758,679 to 759,821 _RS03370 BPHYT_RS03375: BPHYT_RS03375 - NAD(P) transhydrogenase, at 759,837 to 760,163 _RS03375 BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617 _RS03380 Position (kb) 759 760 761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 758.966 kb on + strand, within BPHYT_RS03370at 758.966 kb on + strand, within BPHYT_RS03370at 759.090 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.367 kb on - strand, within BPHYT_RS03370at 759.647 kb on + strand, within BPHYT_RS03370at 759.647 kb on + strand, within BPHYT_RS03370at 759.819 kb on + strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.891 kb on + strand, within BPHYT_RS03375at 760.190 kb on + strandat 760.190 kb on + strandat 760.265 kb on - strandat 760.493 kb on - strand, within BPHYT_RS03380at 760.890 kb on - strand, within BPHYT_RS03380at 760.989 kb on - strand, within BPHYT_RS03380

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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758,966 + BPHYT_RS03370 0.25 +0.2
758,966 + BPHYT_RS03370 0.25 +0.9
759,090 + BPHYT_RS03370 0.36 -0.2
759,103 + BPHYT_RS03370 0.37 +0.5
759,103 + BPHYT_RS03370 0.37 +1.7
759,103 + BPHYT_RS03370 0.37 +0.5
759,367 - BPHYT_RS03370 0.60 -0.3
759,647 + BPHYT_RS03370 0.85 -0.2
759,647 + BPHYT_RS03370 0.85 +0.4
759,819 + -0.8
759,820 - -0.1
759,820 - +0.3
759,820 - -0.1
759,820 - -1.3
759,891 + BPHYT_RS03375 0.17 -1.5
760,190 + -3.9
760,190 + -0.3
760,265 - -0.8
760,493 - BPHYT_RS03380 0.23 -0.6
760,890 - BPHYT_RS03380 0.50 -0.2
760,989 - BPHYT_RS03380 0.57 +0.0

Or see this region's nucleotide sequence