Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02010

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotidesBPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotides BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108 _RS02005 BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848 _RS02010 BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data), at 456,944 to 460,531 _RS02015 Position (kb) 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 455.201 kb on - strand, within BPHYT_RS02005at 455.950 kb on + strand, within BPHYT_RS02005at 456.153 kb on - strandat 456.355 kb on - strand, within BPHYT_RS02010at 456.355 kb on - strand, within BPHYT_RS02010at 456.370 kb on - strand, within BPHYT_RS02010at 456.854 kb on + strandat 456.859 kb on - strandat 456.859 kb on - strandat 456.859 kb on - strandat 457.454 kb on + strand, within BPHYT_RS02015at 457.466 kb on - strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.615 kb on - strand, within BPHYT_RS02015at 457.615 kb on - strand, within BPHYT_RS02015at 457.629 kb on + strand, within BPHYT_RS02015at 457.629 kb on + strand, within BPHYT_RS02015at 457.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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455,201 - BPHYT_RS02005 0.28 -1.1
455,950 + BPHYT_RS02005 0.87 +4.3
456,153 - +0.4
456,355 - BPHYT_RS02010 0.29 +0.5
456,355 - BPHYT_RS02010 0.29 -1.1
456,370 - BPHYT_RS02010 0.31 -2.4
456,854 + -1.6
456,859 - +0.4
456,859 - +0.7
456,859 - -0.7
457,454 + BPHYT_RS02015 0.14 -0.6
457,466 - BPHYT_RS02015 0.15 -0.6
457,614 + BPHYT_RS02015 0.19 +0.9
457,614 + BPHYT_RS02015 0.19 +0.2
457,614 + BPHYT_RS02015 0.19 -0.2
457,615 - BPHYT_RS02015 0.19 -0.4
457,615 - BPHYT_RS02015 0.19 -3.1
457,629 + BPHYT_RS02015 0.19 -1.1
457,629 + BPHYT_RS02015 0.19 +0.3
457,630 - +1.7

Or see this region's nucleotide sequence