Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01030 and BPHYT_RS01035 are separated by 341 nucleotides BPHYT_RS01035 and BPHYT_RS01040 overlap by 4 nucleotides BPHYT_RS01040 and BPHYT_RS01045 are separated by 192 nucleotides
BPHYT_RS01030: BPHYT_RS01030 - bacterioferritin, at 237,119 to 237,598
_RS01030
BPHYT_RS01035: BPHYT_RS01035 - cyanate hydratase, at 237,940 to 238,389
_RS01035
BPHYT_RS01040: BPHYT_RS01040 - Fis family transcriptional regulator, at 238,386 to 238,841
_RS01040
BPHYT_RS01045: BPHYT_RS01045 - hypothetical protein, at 239,034 to 239,327
_RS01045
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.025 kb on + strand at 237.025 kb on + strand at 237.025 kb on + strand at 237.026 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.030 kb on - strand at 237.120 kb on + strand at 237.153 kb on + strand at 237.279 kb on + strand, within BPHYT_RS01030 at 237.466 kb on - strand, within BPHYT_RS01030 at 237.504 kb on + strand, within BPHYT_RS01030 at 237.504 kb on + strand, within BPHYT_RS01030 at 237.505 kb on - strand, within BPHYT_RS01030 at 237.525 kb on + strand, within BPHYT_RS01030 at 237.525 kb on + strand, within BPHYT_RS01030 at 237.627 kb on - strand at 237.702 kb on + strand at 237.810 kb on + strand at 237.810 kb on + strand at 237.841 kb on + strand at 237.879 kb on - strand at 237.889 kb on + strand at 237.889 kb on + strand at 237.890 kb on - strand at 238.204 kb on + strand, within BPHYT_RS01035 at 238.204 kb on + strand, within BPHYT_RS01035 at 238.376 kb on - strand at 238.384 kb on + strand at 238.385 kb on - strand at 238.388 kb on - strand at 238.657 kb on + strand, within BPHYT_RS01040 at 238.711 kb on + strand, within BPHYT_RS01040 at 238.712 kb on - strand, within BPHYT_RS01040 at 238.844 kb on + strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.845 kb on - strand at 238.849 kb on - strand at 238.849 kb on - strand at 238.895 kb on + strand at 238.899 kb on + strand at 238.900 kb on - strand at 238.904 kb on + strand at 238.905 kb on - strand at 238.905 kb on - strand at 238.912 kb on - strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.995 kb on + strand at 238.996 kb on - strand at 239.212 kb on + strand, within BPHYT_RS01045 at 239.212 kb on + strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.213 kb on - strand, within BPHYT_RS01045 at 239.296 kb on + strand, within BPHYT_RS01045 at 239.302 kb on + strand at 239.302 kb on + strand at 239.302 kb on + strand at 239.303 kb on - strand at 239.303 kb on - strand at 239.325 kb on + strand at 239.339 kb on + strand at 239.339 kb on + strand at 239.340 kb on - strand at 239.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C) remove 237,025 + +0.5 237,025 + +0.1 237,025 + -0.7 237,026 - -0.1 237,030 - +0.1 237,030 - -1.6 237,030 - -1.3 237,030 - -2.9 237,030 - +0.4 237,030 - -1.3 237,120 + -0.5 237,153 + +0.9 237,279 + BPHYT_RS01030 0.33 +0.6 237,466 - BPHYT_RS01030 0.72 +0.6 237,504 + BPHYT_RS01030 0.80 -0.8 237,504 + BPHYT_RS01030 0.80 -0.7 237,505 - BPHYT_RS01030 0.80 +0.4 237,525 + BPHYT_RS01030 0.85 -0.1 237,525 + BPHYT_RS01030 0.85 -0.2 237,627 - +0.3 237,702 + -0.8 237,810 + +0.9 237,810 + -0.2 237,841 + +0.2 237,879 - +0.4 237,889 + -0.6 237,889 + +0.1 237,890 - -0.9 238,204 + BPHYT_RS01035 0.59 +0.3 238,204 + BPHYT_RS01035 0.59 +0.6 238,376 - +0.2 238,384 + -1.4 238,385 - -2.0 238,388 - -0.1 238,657 + BPHYT_RS01040 0.59 -0.4 238,711 + BPHYT_RS01040 0.71 +0.2 238,712 - BPHYT_RS01040 0.71 +2.2 238,844 + +0.1 238,845 - +0.9 238,845 - +0.3 238,845 - -0.0 238,849 - -0.7 238,849 - +0.7 238,895 + +0.7 238,899 + +0.3 238,900 - -2.4 238,904 + -0.4 238,905 - +2.7 238,905 - +1.0 238,912 - +0.5 238,980 + +0.0 238,980 + -0.1 238,995 + -1.1 238,996 - +1.2 239,212 + BPHYT_RS01045 0.61 +0.2 239,212 + BPHYT_RS01045 0.61 +0.0 239,213 - BPHYT_RS01045 0.61 +1.2 239,213 - BPHYT_RS01045 0.61 +0.8 239,213 - BPHYT_RS01045 0.61 +0.9 239,213 - BPHYT_RS01045 0.61 +0.4 239,296 + BPHYT_RS01045 0.89 -0.5 239,302 + +0.0 239,302 + +0.1 239,302 + +0.1 239,303 - +2.1 239,303 - -0.5 239,325 + +0.5 239,339 + -0.3 239,339 + -0.5 239,340 - -0.2 239,340 - +1.5
Or see this region's nucleotide sequence