Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004691 and ABIE53_004692 are separated by 3 nucleotides ABIE53_004692 and ABIE53_004693 are separated by 40 nucleotides ABIE53_004693 and ABIE53_004694 are separated by 35 nucleotides
ABIE53_004691: ABIE53_004691 - ACS family glucarate transporter-like MFS transporter, at 873,673 to 874,959
_004691
ABIE53_004692: ABIE53_004692 - 2-keto-4-pentenoate hydratase, at 874,963 to 875,748
_004692
ABIE53_004693: ABIE53_004693 - FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase, at 875,789 to 878,809
_004693
ABIE53_004694: ABIE53_004694 - AraC family transcriptional regulator, at 878,845 to 879,765
_004694
Position (kb) 875
876
877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 874.813 kb on + strand, within ABIE53_004691 at 875.323 kb on + strand, within ABIE53_004692 at 875.324 kb on - strand, within ABIE53_004692 at 875.324 kb on - strand, within ABIE53_004692 at 875.324 kb on - strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.325 kb on + strand, within ABIE53_004692 at 875.326 kb on - strand, within ABIE53_004692 at 875.326 kb on - strand, within ABIE53_004692 at 875.326 kb on - strand, within ABIE53_004692 at 875.326 kb on - strand, within ABIE53_004692 at 875.479 kb on + strand, within ABIE53_004692 at 875.480 kb on - strand, within ABIE53_004692 at 875.480 kb on - strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.662 kb on + strand, within ABIE53_004692 at 875.663 kb on - strand, within ABIE53_004692 at 875.663 kb on - strand, within ABIE53_004692 at 875.663 kb on - strand, within ABIE53_004692 at 875.743 kb on + strand at 875.743 kb on + strand at 875.743 kb on + strand at 875.743 kb on + strand at 875.743 kb on + strand at 875.744 kb on - strand at 875.776 kb on - strand at 875.931 kb on - strand at 875.951 kb on + strand at 875.951 kb on + strand at 875.952 kb on - strand at 875.952 kb on - strand at 876.084 kb on + strand at 876.084 kb on + strand at 876.084 kb on + strand at 876.084 kb on + strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.085 kb on - strand at 876.124 kb on + strand, within ABIE53_004693 at 876.124 kb on + strand, within ABIE53_004693 at 876.124 kb on + strand, within ABIE53_004693 at 876.125 kb on - strand, within ABIE53_004693 at 876.125 kb on - strand, within ABIE53_004693 at 876.237 kb on + strand, within ABIE53_004693 at 876.237 kb on + strand, within ABIE53_004693 at 876.238 kb on - strand, within ABIE53_004693 at 876.238 kb on - strand, within ABIE53_004693 at 876.238 kb on - strand, within ABIE53_004693 at 876.309 kb on - strand, within ABIE53_004693 at 876.421 kb on - strand, within ABIE53_004693 at 876.545 kb on + strand, within ABIE53_004693 at 876.545 kb on + strand, within ABIE53_004693 at 876.545 kb on + strand, within ABIE53_004693 at 876.546 kb on - strand, within ABIE53_004693 at 876.546 kb on - strand, within ABIE53_004693 at 876.546 kb on - strand, within ABIE53_004693 at 876.547 kb on + strand, within ABIE53_004693 at 876.547 kb on + strand, within ABIE53_004693 at 876.548 kb on - strand, within ABIE53_004693 at 877.079 kb on + strand, within ABIE53_004693 at 877.080 kb on - strand, within ABIE53_004693 at 877.080 kb on - strand, within ABIE53_004693 at 877.080 kb on - strand, within ABIE53_004693 at 877.133 kb on + strand, within ABIE53_004693 at 877.247 kb on + strand, within ABIE53_004693 at 877.248 kb on - strand, within ABIE53_004693 at 877.248 kb on - strand, within ABIE53_004693 at 877.248 kb on - strand, within ABIE53_004693 at 877.259 kb on + strand, within ABIE53_004693 at 877.260 kb on - strand, within ABIE53_004693 at 877.313 kb on + strand, within ABIE53_004693 at 877.313 kb on + strand, within ABIE53_004693 at 877.424 kb on + strand, within ABIE53_004693 at 877.765 kb on - strand, within ABIE53_004693 at 877.899 kb on - strand, within ABIE53_004693 at 878.098 kb on + strand, within ABIE53_004693 at 878.098 kb on + strand, within ABIE53_004693 at 878.099 kb on - strand, within ABIE53_004693 at 878.099 kb on - strand, within ABIE53_004693 at 878.165 kb on + strand, within ABIE53_004693 at 878.165 kb on + strand, within ABIE53_004693 at 878.165 kb on + strand, within ABIE53_004693 at 878.165 kb on + strand, within ABIE53_004693 at 878.166 kb on - strand, within ABIE53_004693 at 878.291 kb on + strand, within ABIE53_004693 at 878.291 kb on + strand, within ABIE53_004693 at 878.291 kb on + strand, within ABIE53_004693 at 878.292 kb on - strand, within ABIE53_004693 at 878.366 kb on + strand, within ABIE53_004693 at 878.366 kb on + strand, within ABIE53_004693 at 878.366 kb on + strand, within ABIE53_004693 at 878.367 kb on - strand, within ABIE53_004693 at 878.367 kb on - strand, within ABIE53_004693 at 878.367 kb on - strand, within ABIE53_004693 at 878.367 kb on - strand, within ABIE53_004693 at 878.367 kb on - strand, within ABIE53_004693 at 878.625 kb on - strand at 878.639 kb on + strand at 878.640 kb on - strand at 878.830 kb on - strand at 878.843 kb on + strand at 878.843 kb on + strand at 878.843 kb on + strand at 878.843 kb on + strand at 878.844 kb on - strand at 878.859 kb on + strand at 878.859 kb on + strand at 878.859 kb on + strand at 878.859 kb on + strand at 878.859 kb on + strand at 878.860 kb on - strand at 878.860 kb on - strand at 878.933 kb on + strand at 878.934 kb on - strand at 878.941 kb on + strand, within ABIE53_004694 at 878.942 kb on - strand, within ABIE53_004694 at 878.942 kb on - strand, within ABIE53_004694 at 879.001 kb on + strand, within ABIE53_004694 at 879.001 kb on + strand, within ABIE53_004694 at 879.140 kb on + strand, within ABIE53_004694 at 879.140 kb on + strand, within ABIE53_004694 at 879.140 kb on + strand, within ABIE53_004694 at 879.140 kb on + strand, within ABIE53_004694 at 879.141 kb on - strand, within ABIE53_004694 at 879.310 kb on + strand, within ABIE53_004694 at 879.311 kb on - strand, within ABIE53_004694 at 879.311 kb on - strand, within ABIE53_004694 at 879.311 kb on - strand, within ABIE53_004694 at 879.311 kb on - strand, within ABIE53_004694 at 879.311 kb on - strand, within ABIE53_004694 at 879.338 kb on + strand, within ABIE53_004694 at 879.338 kb on + strand, within ABIE53_004694 at 879.338 kb on + strand, within ABIE53_004694 at 879.339 kb on - strand, within ABIE53_004694 at 879.339 kb on - strand, within ABIE53_004694 at 879.339 kb on - strand, within ABIE53_004694 at 879.422 kb on + strand, within ABIE53_004694 at 879.422 kb on + strand, within ABIE53_004694 at 879.422 kb on + strand, within ABIE53_004694 at 879.423 kb on - strand, within ABIE53_004694 at 879.441 kb on + strand, within ABIE53_004694 at 879.441 kb on + strand, within ABIE53_004694 at 879.442 kb on - strand, within ABIE53_004694 at 879.442 kb on - strand, within ABIE53_004694 at 879.442 kb on - strand, within ABIE53_004694 at 879.442 kb on - strand, within ABIE53_004694 at 879.509 kb on + strand, within ABIE53_004694 at 879.557 kb on + strand, within ABIE53_004694 at 879.557 kb on + strand, within ABIE53_004694 at 879.590 kb on + strand, within ABIE53_004694 at 879.590 kb on + strand, within ABIE53_004694 at 879.590 kb on + strand, within ABIE53_004694 at 879.701 kb on - strand at 879.701 kb on - strand at 879.701 kb on - strand at 879.796 kb on + strand at 879.796 kb on + strand at 879.806 kb on + strand at 879.806 kb on + strand at 879.806 kb on + strand at 879.806 kb on + strand at 879.806 kb on + strand at 879.806 kb on + strand at 879.807 kb on - strand at 879.807 kb on - strand at 879.807 kb on - strand at 879.808 kb on + strand at 879.808 kb on + strand at 879.808 kb on + strand at 879.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 874,813 + ABIE53_004691 0.89 +0.8 875,323 + ABIE53_004692 0.46 -1.5 875,324 - ABIE53_004692 0.46 -0.4 875,324 - ABIE53_004692 0.46 -0.4 875,324 - ABIE53_004692 0.46 -2.0 875,325 + ABIE53_004692 0.46 -0.7 875,325 + ABIE53_004692 0.46 -1.1 875,325 + ABIE53_004692 0.46 -0.2 875,325 + ABIE53_004692 0.46 +0.4 875,325 + ABIE53_004692 0.46 -0.6 875,325 + ABIE53_004692 0.46 -0.5 875,325 + ABIE53_004692 0.46 +0.6 875,326 - ABIE53_004692 0.46 -0.7 875,326 - ABIE53_004692 0.46 -0.4 875,326 - ABIE53_004692 0.46 -1.3 875,326 - ABIE53_004692 0.46 -2.2 875,479 + ABIE53_004692 0.66 +0.7 875,480 - ABIE53_004692 0.66 +0.2 875,480 - ABIE53_004692 0.66 -1.0 875,662 + ABIE53_004692 0.89 -1.9 875,662 + ABIE53_004692 0.89 +1.2 875,662 + ABIE53_004692 0.89 -0.1 875,662 + ABIE53_004692 0.89 -1.7 875,662 + ABIE53_004692 0.89 -1.9 875,662 + ABIE53_004692 0.89 -0.3 875,663 - ABIE53_004692 0.89 -1.1 875,663 - ABIE53_004692 0.89 +1.9 875,663 - ABIE53_004692 0.89 -1.1 875,743 + -1.5 875,743 + +0.0 875,743 + -0.2 875,743 + -1.8 875,743 + +1.2 875,744 - -0.4 875,776 - -0.3 875,931 - -1.0 875,951 + +1.7 875,951 + +0.4 875,952 - +2.2 875,952 - -0.6 876,084 + -0.7 876,084 + +0.4 876,084 + +2.2 876,084 + +3.7 876,085 - +1.2 876,085 - -1.1 876,085 - +0.4 876,085 - -0.8 876,085 - -2.7 876,085 - -0.1 876,085 - +2.5 876,085 - -1.6 876,085 - +0.4 876,124 + ABIE53_004693 0.11 +0.7 876,124 + ABIE53_004693 0.11 -1.0 876,124 + ABIE53_004693 0.11 -0.6 876,125 - ABIE53_004693 0.11 -0.4 876,125 - ABIE53_004693 0.11 -1.0 876,237 + ABIE53_004693 0.15 +0.8 876,237 + ABIE53_004693 0.15 +0.3 876,238 - ABIE53_004693 0.15 -1.1 876,238 - ABIE53_004693 0.15 -1.2 876,238 - ABIE53_004693 0.15 +1.4 876,309 - ABIE53_004693 0.17 -0.8 876,421 - ABIE53_004693 0.21 -1.3 876,545 + ABIE53_004693 0.25 +0.7 876,545 + ABIE53_004693 0.25 +0.2 876,545 + ABIE53_004693 0.25 -1.6 876,546 - ABIE53_004693 0.25 -0.6 876,546 - ABIE53_004693 0.25 +1.7 876,546 - ABIE53_004693 0.25 -1.2 876,547 + ABIE53_004693 0.25 -1.3 876,547 + ABIE53_004693 0.25 -0.2 876,548 - ABIE53_004693 0.25 -1.1 877,079 + ABIE53_004693 0.43 -1.8 877,080 - ABIE53_004693 0.43 -1.2 877,080 - ABIE53_004693 0.43 +0.0 877,080 - ABIE53_004693 0.43 -1.1 877,133 + ABIE53_004693 0.44 -0.1 877,247 + ABIE53_004693 0.48 -0.6 877,248 - ABIE53_004693 0.48 -0.3 877,248 - ABIE53_004693 0.48 -1.9 877,248 - ABIE53_004693 0.48 -0.7 877,259 + ABIE53_004693 0.49 +1.7 877,260 - ABIE53_004693 0.49 +1.2 877,313 + ABIE53_004693 0.50 -0.2 877,313 + ABIE53_004693 0.50 -1.7 877,424 + ABIE53_004693 0.54 -0.3 877,765 - ABIE53_004693 0.65 -0.3 877,899 - ABIE53_004693 0.70 +0.7 878,098 + ABIE53_004693 0.76 -0.8 878,098 + ABIE53_004693 0.76 +0.2 878,099 - ABIE53_004693 0.76 +1.7 878,099 - ABIE53_004693 0.76 +1.2 878,165 + ABIE53_004693 0.79 -0.3 878,165 + ABIE53_004693 0.79 -0.6 878,165 + ABIE53_004693 0.79 +1.6 878,165 + ABIE53_004693 0.79 +1.7 878,166 - ABIE53_004693 0.79 -0.3 878,291 + ABIE53_004693 0.83 -1.1 878,291 + ABIE53_004693 0.83 +0.2 878,291 + ABIE53_004693 0.83 +0.2 878,292 - ABIE53_004693 0.83 +2.7 878,366 + ABIE53_004693 0.85 +0.4 878,366 + ABIE53_004693 0.85 +1.4 878,366 + ABIE53_004693 0.85 -0.1 878,367 - ABIE53_004693 0.85 +0.1 878,367 - ABIE53_004693 0.85 +0.1 878,367 - ABIE53_004693 0.85 -0.3 878,367 - ABIE53_004693 0.85 -1.4 878,367 - ABIE53_004693 0.85 -1.3 878,625 - -0.0 878,639 + +1.1 878,640 - -1.1 878,830 - -0.9 878,843 + -0.4 878,843 + -2.1 878,843 + +0.1 878,843 + +1.1 878,844 - +0.1 878,859 + +0.9 878,859 + +0.1 878,859 + +0.0 878,859 + -0.3 878,859 + -0.6 878,860 - -0.6 878,860 - -1.2 878,933 + -1.4 878,934 - -2.2 878,941 + ABIE53_004694 0.10 +1.1 878,942 - ABIE53_004694 0.11 -0.4 878,942 - ABIE53_004694 0.11 -0.6 879,001 + ABIE53_004694 0.17 -1.6 879,001 + ABIE53_004694 0.17 +0.1 879,140 + ABIE53_004694 0.32 -0.9 879,140 + ABIE53_004694 0.32 +1.0 879,140 + ABIE53_004694 0.32 -2.3 879,140 + ABIE53_004694 0.32 -0.1 879,141 - ABIE53_004694 0.32 -0.3 879,310 + ABIE53_004694 0.50 -1.0 879,311 - ABIE53_004694 0.51 -0.7 879,311 - ABIE53_004694 0.51 -0.3 879,311 - ABIE53_004694 0.51 +1.1 879,311 - ABIE53_004694 0.51 -1.0 879,311 - ABIE53_004694 0.51 -0.1 879,338 + ABIE53_004694 0.54 +0.3 879,338 + ABIE53_004694 0.54 +0.4 879,338 + ABIE53_004694 0.54 +0.1 879,339 - ABIE53_004694 0.54 -1.3 879,339 - ABIE53_004694 0.54 -1.1 879,339 - ABIE53_004694 0.54 +0.4 879,422 + ABIE53_004694 0.63 -1.5 879,422 + ABIE53_004694 0.63 -1.2 879,422 + ABIE53_004694 0.63 -0.5 879,423 - ABIE53_004694 0.63 -0.1 879,441 + ABIE53_004694 0.65 +0.4 879,441 + ABIE53_004694 0.65 -0.4 879,442 - ABIE53_004694 0.65 -0.3 879,442 - ABIE53_004694 0.65 +0.4 879,442 - ABIE53_004694 0.65 -0.6 879,442 - ABIE53_004694 0.65 +1.9 879,509 + ABIE53_004694 0.72 +1.7 879,557 + ABIE53_004694 0.77 +0.4 879,557 + ABIE53_004694 0.77 -1.1 879,590 + ABIE53_004694 0.81 -1.0 879,590 + ABIE53_004694 0.81 -0.8 879,590 + ABIE53_004694 0.81 -1.7 879,701 - -0.7 879,701 - -0.1 879,701 - -0.3 879,796 + -0.6 879,796 + -0.5 879,806 + +0.4 879,806 + -0.9 879,806 + -1.7 879,806 + -3.0 879,806 + +2.0 879,806 + -0.8 879,807 - +3.0 879,807 - +0.7 879,807 - -0.1 879,808 + +1.4 879,808 + +0.4 879,808 + +1.1 879,809 - -1.0
Or see this region's nucleotide sequence