Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003573

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
4,012,653	-				-0.8
4,012,690	+				+1.0
4,012,810	-		ABIE53_003572	0.17	+0.0
4,012,878	+		ABIE53_003572	0.25	-1.7
4,012,878	+		ABIE53_003572	0.25	-0.2
4,012,878	+		ABIE53_003572	0.25	+0.5
4,012,878	+		ABIE53_003572	0.25	-0.3
4,012,878	+		ABIE53_003572	0.25	-0.1
4,012,879	-		ABIE53_003572	0.25	+1.5
4,012,879	-		ABIE53_003572	0.25	-0.5
4,012,879	-		ABIE53_003572	0.25	+3.5
4,012,941	+		ABIE53_003572	0.31	-1.5
4,012,941	+		ABIE53_003572	0.31	-0.2
4,012,941	+		ABIE53_003572	0.31	+1.0
4,012,941	+		ABIE53_003572	0.31	+0.8
4,012,941	+		ABIE53_003572	0.31	+0.2
4,012,942	-		ABIE53_003572	0.31	-1.5
4,012,942	-		ABIE53_003572	0.31	-0.0
4,012,942	-		ABIE53_003572	0.31	-1.9
4,013,135	+		ABIE53_003572	0.52	-2.2
4,013,135	+		ABIE53_003572	0.52	+1.2
4,013,135	+		ABIE53_003572	0.52	-3.2
4,013,136	-		ABIE53_003572	0.52	+1.5
4,013,208	+		ABIE53_003572	0.60	-0.3
4,013,208	+		ABIE53_003572	0.60	+0.5
4,013,208	+		ABIE53_003572	0.60	+0.5
4,013,208	+		ABIE53_003572	0.60	+1.2
4,013,208	+		ABIE53_003572	0.60	+0.9
4,013,208	+		ABIE53_003572	0.60	-0.4
4,013,208	+		ABIE53_003572	0.60	+2.2
4,013,208	+		ABIE53_003572	0.60	-1.2
4,013,208	+		ABIE53_003572	0.60	-1.5
4,013,208	+		ABIE53_003572	0.60	+1.2
4,013,208	+		ABIE53_003572	0.60	-1.7
4,013,208	+		ABIE53_003572	0.60	-0.5
4,013,208	+		ABIE53_003572	0.60	+0.2
4,013,208	+		ABIE53_003572	0.60	+0.8
4,013,208	+		ABIE53_003572	0.60	+0.5
4,013,209	-		ABIE53_003572	0.60	-0.7
4,013,209	-		ABIE53_003572	0.60	-1.1
4,013,209	-		ABIE53_003572	0.60	+1.2
4,013,209	-		ABIE53_003572	0.60	+0.5
4,013,209	-		ABIE53_003572	0.60	-0.5
4,013,209	-		ABIE53_003572	0.60	+2.8
4,013,209	-		ABIE53_003572	0.60	+1.8
4,013,209	-		ABIE53_003572	0.60	-0.6
4,013,209	-		ABIE53_003572	0.60	+1.1
4,013,209	-		ABIE53_003572	0.60	-0.7
4,013,212	+		ABIE53_003572	0.60	-0.5
4,013,212	+		ABIE53_003572	0.60	-0.4
4,013,212	+		ABIE53_003572	0.60	-1.0
4,013,212	+		ABIE53_003572	0.60	-0.8
4,013,212	+		ABIE53_003572	0.60	-1.9
4,013,212	+		ABIE53_003572	0.60	+0.5
4,013,212	+		ABIE53_003572	0.60	-0.6
4,013,212	+		ABIE53_003572	0.60	-0.1
4,013,212	+		ABIE53_003572	0.60	-1.0
4,013,212	+		ABIE53_003572	0.60	-0.1
4,013,212	+		ABIE53_003572	0.60	+1.2
4,013,212	+		ABIE53_003572	0.60	-0.4
4,013,212	+		ABIE53_003572	0.60	-0.7
4,013,212	+		ABIE53_003572	0.60	-1.1
4,013,212	+		ABIE53_003572	0.60	-0.8
4,013,212	+		ABIE53_003572	0.60	-0.8
4,013,212	+		ABIE53_003572	0.60	-0.9
4,013,212	-		ABIE53_003572	0.60	-1.3
4,013,213	-		ABIE53_003572	0.60	-0.7
4,013,213	-		ABIE53_003572	0.60	+2.5
4,013,213	-		ABIE53_003572	0.60	-1.0
4,013,213	-		ABIE53_003572	0.60	-2.3
4,013,213	-		ABIE53_003572	0.60	+0.8
4,013,213	-		ABIE53_003572	0.60	-0.4
4,013,213	-		ABIE53_003572	0.60	-1.1
4,013,213	-		ABIE53_003572	0.60	+1.2
4,013,213	-		ABIE53_003572	0.60	-0.2
4,013,213	-		ABIE53_003572	0.60	-0.2
4,013,213	-		ABIE53_003572	0.60	-1.9
4,013,226	+		ABIE53_003572	0.62	+2.0
4,013,427	+		ABIE53_003572	0.83	+1.4
4,013,427	+		ABIE53_003572	0.83	-2.4
4,013,428	-		ABIE53_003572	0.83	-1.2
4,013,521	-				-0.2
4,013,571	+				+2.8
4,013,571	+				-0.6
4,013,583	+				-0.8
4,013,583	+				-2.7
4,013,584	-				-1.1
4,013,584	-				+1.5
4,013,584	-				+0.1
4,013,584	-				+0.8
4,013,586	+				-0.2
4,013,586	+				-1.5
4,013,586	+				+1.6
4,013,586	+				-0.9
4,013,587	-				-0.7
4,013,596	+				-0.9
4,013,596	+				+0.8
4,013,596	+				-1.1
4,013,596	+				-1.5
4,013,596	+				+0.6
4,013,596	+				-1.0
4,013,596	+				-2.9
4,013,596	+				+1.2
4,013,596	+				+1.0
4,013,597	-				+0.8
4,013,605	+				-1.6
4,013,605	+				-1.1
4,013,606	-				-1.5
4,013,606	-				+0.5
4,013,634	-				-2.0
4,013,680	+		ABIE53_003573	0.14	+1.4
4,013,680	+		ABIE53_003573	0.14	-0.8
4,013,680	+		ABIE53_003573	0.14	-0.2
4,013,680	+		ABIE53_003573	0.14	-0.3
4,013,680	+		ABIE53_003573	0.14	+0.2
4,013,680	+		ABIE53_003573	0.14	+1.2
4,013,680	+		ABIE53_003573	0.14	-0.6
4,013,680	+		ABIE53_003573	0.14	-0.6
4,013,680	+		ABIE53_003573	0.14	+1.8
4,013,680	+		ABIE53_003573	0.14	-0.2
4,013,680	+		ABIE53_003573	0.14	-1.9
4,013,681	-		ABIE53_003573	0.15	-0.6
4,013,681	-		ABIE53_003573	0.15	+0.3
4,013,681	-		ABIE53_003573	0.15	+0.2
4,013,681	-		ABIE53_003573	0.15	-1.5
4,013,681	-		ABIE53_003573	0.15	+0.1
4,013,681	-		ABIE53_003573	0.15	+0.2
4,013,681	-		ABIE53_003573	0.15	+1.0
4,013,681	-		ABIE53_003573	0.15	+0.5
4,013,681	-		ABIE53_003573	0.15	-1.5
4,013,681	-		ABIE53_003573	0.15	+1.8
4,013,682	+		ABIE53_003573	0.15	-0.4
4,013,682	+		ABIE53_003573	0.15	+0.1
4,013,682	+		ABIE53_003573	0.15	+0.4
4,013,682	+		ABIE53_003573	0.15	-0.2
4,013,683	-		ABIE53_003573	0.15	-1.1
4,013,683	-		ABIE53_003573	0.15	-1.0
4,013,683	-		ABIE53_003573	0.15	+0.8
4,013,704	+		ABIE53_003573	0.19	+0.5
4,013,704	+		ABIE53_003573	0.19	-1.8
4,013,704	+		ABIE53_003573	0.19	+0.2
4,013,705	-		ABIE53_003573	0.20	-1.6
4,013,705	-		ABIE53_003573	0.20	-0.7
4,013,705	-		ABIE53_003573	0.20	-0.0
4,013,854	-		ABIE53_003573	0.51	-1.2
4,013,889	+		ABIE53_003573	0.58	-0.9
4,013,889	+		ABIE53_003573	0.58	-0.0
4,013,889	+		ABIE53_003573	0.58	-0.4
4,013,889	+		ABIE53_003573	0.58	-0.7
4,013,889	+		ABIE53_003573	0.58	-1.2
4,013,890	-		ABIE53_003573	0.58	+0.9
4,013,890	-		ABIE53_003573	0.58	-0.0
4,013,890	-		ABIE53_003573	0.58	+0.1
4,013,890	-		ABIE53_003573	0.58	+1.8
4,013,964	+		ABIE53_003573	0.74	-1.6
4,013,964	+		ABIE53_003573	0.74	-2.5
4,013,965	-		ABIE53_003573	0.74	-0.0
4,013,965	-		ABIE53_003573	0.74	-0.3
4,014,085	+				-1.3
4,014,085	+				-1.9
4,014,198	+				+0.6
4,014,198	+				-1.4
4,014,198	+				+5.1
4,014,208	+				+0.0
4,014,208	+				-1.7
4,014,261	-				+2.6
4,014,287	+				+7.8
4,014,323	+				+6.3
4,014,323	+				+6.2
4,014,323	+				+1.6
4,014,323	+				+2.5
4,014,324	-				+4.3
4,014,324	-				+4.0
4,014,324	-				+1.2
4,014,324	-				+1.5
4,014,324	-				+4.6
4,014,324	-				+0.9
4,014,324	-				+4.1
4,014,324	-				+0.2
4,014,324	-				+0.8
4,014,556	+		ABIE53_003574	0.32	+1.0
4,014,556	+		ABIE53_003574	0.32	+5.7
4,014,557	-		ABIE53_003574	0.32	+2.8
4,014,557	-		ABIE53_003574	0.32	+0.7
4,014,762	-		ABIE53_003574	0.64	+3.4
4,014,762	-		ABIE53_003574	0.64	+2.6
4,014,762	-		ABIE53_003574	0.64	+2.7
4,014,762	-		ABIE53_003574	0.64	+3.8
4,014,762	-		ABIE53_003574	0.64	+1.8
4,014,762	-		ABIE53_003574	0.64	+2.8
4,014,762	-		ABIE53_003574	0.64	+3.7
4,014,827	+		ABIE53_003574	0.74	+0.8
4,014,827	+		ABIE53_003574	0.74	+0.2
4,014,827	+		ABIE53_003574	0.74	+3.7
4,014,828	-		ABIE53_003574	0.74	+1.6
4,014,828	-		ABIE53_003574	0.74	+3.0
4,014,828	-		ABIE53_003574	0.74	+1.2
4,014,828	-		ABIE53_003574	0.74	+2.1
4,014,861	-		ABIE53_003574	0.79	+3.6
4,014,861	-		ABIE53_003574	0.79	+1.2
4,014,893	+		ABIE53_003574	0.84	+2.4
4,014,893	+		ABIE53_003574	0.84	+2.6
4,014,893	+		ABIE53_003574	0.84	+0.8
4,014,893	+		ABIE53_003574	0.84	+0.8
4,014,894	-		ABIE53_003574	0.84	+1.0
4,014,894	-		ABIE53_003574	0.84	-0.8
4,014,968	-				+2.2
4,015,036	+				+4.0
4,015,036	+				+2.6
4,015,037	-				+2.7
4,015,037	-				+3.3
4,015,037	-				+2.8
4,015,037	-				+1.8
4,015,037	-				-0.2
4,015,037	-				-0.2
4,015,037	-				+1.5
4,015,037	-				+1.9
4,015,037	-				+1.7