Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002336

Experiment: Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
2,622,680	+		ABIE53_002335	0.36	-0.3
2,622,680	+		ABIE53_002335	0.36	+1.3
2,622,680	+		ABIE53_002335	0.36	+0.3
2,622,680	+		ABIE53_002335	0.36	-0.5
2,622,680	+		ABIE53_002335	0.36	+0.3
2,622,681	-		ABIE53_002335	0.36	-1.6
2,622,681	-		ABIE53_002335	0.36	-2.6
2,622,681	-		ABIE53_002335	0.36	-1.6
2,622,813	+		ABIE53_002335	0.48	+1.3
2,622,813	+		ABIE53_002335	0.48	-1.4
2,622,813	+		ABIE53_002335	0.48	-0.5
2,622,813	+		ABIE53_002335	0.48	-0.9
2,622,813	+		ABIE53_002335	0.48	-0.3
2,622,814	-		ABIE53_002335	0.48	-1.2
2,622,814	-		ABIE53_002335	0.48	-1.5
2,622,814	-		ABIE53_002335	0.48	-0.6
2,622,814	-		ABIE53_002335	0.48	-2.3
2,622,814	-		ABIE53_002335	0.48	-2.7
2,622,814	-		ABIE53_002335	0.48	-3.7
2,622,814	-		ABIE53_002335	0.48	+2.3
2,622,814	-		ABIE53_002335	0.48	+1.3
2,622,814	-		ABIE53_002335	0.48	+1.1
2,623,009	+		ABIE53_002335	0.65	-1.5
2,623,009	+		ABIE53_002335	0.65	+2.5
2,623,010	-		ABIE53_002335	0.66	-1.3
2,623,010	-		ABIE53_002335	0.66	-1.3
2,623,010	-		ABIE53_002335	0.66	-1.0
2,623,130	+		ABIE53_002335	0.76	-0.3
2,623,131	-		ABIE53_002335	0.77	+0.7
2,623,131	-		ABIE53_002335	0.77	-0.0
2,623,131	-		ABIE53_002335	0.77	-0.5
2,623,131	-		ABIE53_002335	0.77	+0.7
2,623,132	+		ABIE53_002335	0.77	-1.3
2,623,132	+		ABIE53_002335	0.77	-2.6
2,623,132	+		ABIE53_002335	0.77	-2.6
2,623,133	-		ABIE53_002335	0.77	-1.5
2,623,217	-		ABIE53_002335	0.84	-1.5
2,623,411	+				-0.7
2,623,411	+				-0.0
2,623,412	-				+0.3
2,623,412	-				+1.3
2,623,412	-				+1.0
2,623,511	-				-0.5
2,623,511	-				+0.7
2,623,511	-				-0.3
2,623,654	+		ABIE53_002336	0.16	-2.7
2,623,916	+		ABIE53_002336	0.43	-0.5
2,623,953	+		ABIE53_002336	0.47	-2.1
2,623,953	+		ABIE53_002336	0.47	-0.0
2,623,953	+		ABIE53_002336	0.47	+0.3
2,623,954	-		ABIE53_002336	0.47	-0.0
2,623,954	-		ABIE53_002336	0.47	-1.7
2,623,955	+		ABIE53_002336	0.47	-0.9
2,623,956	-		ABIE53_002336	0.47	+1.3
2,623,956	-		ABIE53_002336	0.47	-1.8
2,623,956	-		ABIE53_002336	0.47	-2.6
2,623,956	-		ABIE53_002336	0.47	-0.3
2,623,956	-		ABIE53_002336	0.47	-0.0
2,623,956	-		ABIE53_002336	0.47	+1.3
2,624,414	+				-0.6
2,624,415	-				-1.3
2,624,469	+				-1.1
2,624,469	+				+0.3
2,624,470	-				+1.3
2,624,470	-				-1.3
2,624,548	+				+1.1
2,624,583	+				-0.9
2,624,584	-				-0.0
2,624,584	-				-0.9
2,624,584	-				+1.3
2,624,584	-				-0.1
2,624,619	+		ABIE53_002337	0.12	+1.7
2,624,620	-		ABIE53_002337	0.12	+1.7
2,624,631	+		ABIE53_002337	0.13	-2.7
2,624,631	+		ABIE53_002337	0.13	-2.1
2,624,631	+		ABIE53_002337	0.13	-2.1
2,624,632	-		ABIE53_002337	0.13	+1.0
2,624,632	-		ABIE53_002337	0.13	+0.5
2,624,632	-		ABIE53_002337	0.13	-1.6
2,624,632	-		ABIE53_002337	0.13	-0.3
2,624,632	-		ABIE53_002337	0.13	+0.3
2,624,632	-		ABIE53_002337	0.13	-3.7
2,624,739	+		ABIE53_002337	0.21	+0.3
2,624,748	+		ABIE53_002337	0.22	+1.1
2,624,748	+		ABIE53_002337	0.22	-1.6
2,624,748	+		ABIE53_002337	0.22	-0.9
2,624,749	-		ABIE53_002337	0.22	-2.1
2,624,749	-		ABIE53_002337	0.22	+1.0
2,624,749	-		ABIE53_002337	0.22	-2.3
2,624,749	-		ABIE53_002337	0.22	-0.2
2,624,749	-		ABIE53_002337	0.22	+0.3
2,624,749	-		ABIE53_002337	0.22	-0.7
2,624,781	+		ABIE53_002337	0.24	-0.9
2,624,782	-		ABIE53_002337	0.24	-0.3
2,624,814	+		ABIE53_002337	0.27	-1.8
2,624,815	-		ABIE53_002337	0.27	-0.0
2,624,815	-		ABIE53_002337	0.27	-1.5
2,624,815	-		ABIE53_002337	0.27	+0.3
2,624,815	-		ABIE53_002337	0.27	+0.7
2,624,815	-		ABIE53_002337	0.27	-1.5
2,624,815	-		ABIE53_002337	0.27	-1.9
2,624,931	+		ABIE53_002337	0.36	-0.8
2,624,932	-		ABIE53_002337	0.36	-0.9
2,624,932	-		ABIE53_002337	0.36	-1.5
2,625,018	+		ABIE53_002337	0.43	-1.5
2,625,018	+		ABIE53_002337	0.43	-0.5
2,625,018	+		ABIE53_002337	0.43	+1.1
2,625,018	+		ABIE53_002337	0.43	-0.7
2,625,018	+		ABIE53_002337	0.43	-1.0
2,625,019	-		ABIE53_002337	0.43	-1.9
2,625,019	-		ABIE53_002337	0.43	-2.5
2,625,019	-		ABIE53_002337	0.43	-0.6
2,625,042	+		ABIE53_002337	0.44	-1.3
2,625,042	+		ABIE53_002337	0.44	-1.9
2,625,043	-		ABIE53_002337	0.45	-0.1
2,625,043	-		ABIE53_002337	0.45	-1.9
2,625,253	+		ABIE53_002337	0.61	-1.4
2,625,253	+		ABIE53_002337	0.61	-2.9
2,625,253	+		ABIE53_002337	0.61	-1.7
2,625,253	+		ABIE53_002337	0.61	+1.3
2,625,253	+		ABIE53_002337	0.61	-2.7
2,625,253	+		ABIE53_002337	0.61	+0.3
2,625,253	+		ABIE53_002337	0.61	-2.1
2,625,253	+		ABIE53_002337	0.61	-0.4
2,625,253	+		ABIE53_002337	0.61	-0.9
2,625,254	-		ABIE53_002337	0.61	-2.3
2,625,254	-		ABIE53_002337	0.61	-0.7
2,625,254	-		ABIE53_002337	0.61	-2.9
2,625,254	-		ABIE53_002337	0.61	+0.7
2,625,254	-		ABIE53_002337	0.61	-0.3
2,625,254	-		ABIE53_002337	0.61	-1.4
2,625,254	-		ABIE53_002337	0.61	-0.5
2,625,254	-		ABIE53_002337	0.61	-0.9
2,625,254	-		ABIE53_002337	0.61	-2.2
2,625,254	-		ABIE53_002337	0.61	-1.4
2,625,283	-		ABIE53_002337	0.63	+2.3
2,625,458	-		ABIE53_002337	0.77	-0.4
2,625,458	-		ABIE53_002337	0.77	-1.5