Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0387

Experiment: Formate/Acetate-Sulfate (10/60-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglnH and DVU0387 are separated by 141 nucleotidesDVU0387 and DVU0388 are separated by 8 nucleotidesDVU0388 and DVU0389 overlap by 1 nucleotides DVU0386: glnH - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 434,628 to 435,377 glnH DVU0387: DVU0387 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 435,519 to 436,196 DVU0387 DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972 DVU0388 DVU0389: DVU0389 - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 436,972 to 437,646 DVU0389 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1at 434.642 kb on + strandat 434.702 kb on - strandat 434.739 kb on + strand, within glnHat 434.824 kb on + strand, within glnHat 434.831 kb on + strand, within glnHat 434.838 kb on + strand, within glnHat 434.854 kb on + strand, within glnHat 434.864 kb on - strand, within glnHat 434.896 kb on + strand, within glnHat 434.901 kb on + strand, within glnHat 434.930 kb on + strand, within glnHat 434.951 kb on + strand, within glnHat 434.959 kb on - strand, within glnHat 435.100 kb on + strand, within glnHat 435.101 kb on - strand, within glnHat 435.174 kb on + strand, within glnHat 435.174 kb on + strand, within glnHat 435.307 kb on - strandat 435.320 kb on + strandat 435.328 kb on - strandat 435.391 kb on + strandat 435.391 kb on - strandat 435.399 kb on - strandat 435.594 kb on + strand, within DVU0387at 435.594 kb on + strand, within DVU0387at 435.594 kb on + strand, within DVU0387at 435.627 kb on + strand, within DVU0387at 435.627 kb on + strand, within DVU0387at 435.650 kb on + strand, within DVU0387at 435.650 kb on + strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.658 kb on - strand, within DVU0387at 435.677 kb on - strand, within DVU0387at 435.796 kb on + strand, within DVU0387at 435.852 kb on + strand, within DVU0387at 435.875 kb on + strand, within DVU0387at 435.896 kb on + strand, within DVU0387at 435.920 kb on + strand, within DVU0387at 435.928 kb on - strand, within DVU0387at 435.979 kb on + strand, within DVU0387at 435.987 kb on - strand, within DVU0387at 435.989 kb on + strand, within DVU0387at 436.074 kb on - strand, within DVU0387at 436.112 kb on - strand, within DVU0387at 436.137 kb on - strandat 436.215 kb on + strandat 436.228 kb on - strandat 436.229 kb on - strandat 436.266 kb on + strandat 436.324 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.362 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.534 kb on + strand, within DVU0388at 436.622 kb on - strand, within DVU0388at 436.627 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.681 kb on + strand, within DVU0388at 436.690 kb on + strand, within DVU0388at 436.724 kb on + strand, within DVU0388at 436.731 kb on + strand, within DVU0388at 436.852 kb on - strand, within DVU0388at 436.879 kb on + strand, within DVU0388at 436.976 kb on - strandat 437.016 kb on + strandat 437.018 kb on + strandat 437.071 kb on - strand, within DVU0389at 437.116 kb on + strand, within DVU0389at 437.124 kb on - strand, within DVU0389at 437.154 kb on + strand, within DVU0389at 437.162 kb on - strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (10/60-30 mM)
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434,642 + +0.5
434,702 - -0.7
434,739 + glnH DVU0386 0.15 -1.0
434,824 + glnH DVU0386 0.26 +1.0
434,831 + glnH DVU0386 0.27 -1.2
434,838 + glnH DVU0386 0.28 -0.6
434,854 + glnH DVU0386 0.30 -0.1
434,864 - glnH DVU0386 0.31 -0.6
434,896 + glnH DVU0386 0.36 -0.1
434,901 + glnH DVU0386 0.36 +0.3
434,930 + glnH DVU0386 0.40 -0.4
434,951 + glnH DVU0386 0.43 -0.4
434,959 - glnH DVU0386 0.44 +0.3
435,100 + glnH DVU0386 0.63 +1.1
435,101 - glnH DVU0386 0.63 +0.3
435,174 + glnH DVU0386 0.73 +1.2
435,174 + glnH DVU0386 0.73 +0.8
435,307 - -2.4
435,320 + -0.0
435,328 - +0.4
435,391 + +0.2
435,391 - -0.6
435,399 - -0.3
435,594 + DVU0387 0.11 -0.0
435,594 + DVU0387 0.11 +0.3
435,594 + DVU0387 0.11 -0.1
435,627 + DVU0387 0.16 -0.3
435,627 + DVU0387 0.16 -0.1
435,650 + DVU0387 0.19 +0.1
435,650 + DVU0387 0.19 +0.0
435,658 - DVU0387 0.21 -0.6
435,658 - DVU0387 0.21 -0.3
435,658 - DVU0387 0.21 -1.4
435,658 - DVU0387 0.21 +1.2
435,658 - DVU0387 0.21 -0.4
435,677 - DVU0387 0.23 +0.1
435,796 + DVU0387 0.41 -0.2
435,852 + DVU0387 0.49 -0.0
435,875 + DVU0387 0.53 +1.3
435,896 + DVU0387 0.56 -0.3
435,920 + DVU0387 0.59 +0.3
435,928 - DVU0387 0.60 -0.3
435,979 + DVU0387 0.68 -0.5
435,987 - DVU0387 0.69 -0.6
435,989 + DVU0387 0.69 -0.1
436,074 - DVU0387 0.82 +0.5
436,112 - DVU0387 0.87 +0.1
436,137 - -0.5
436,215 + -0.3
436,228 - +0.5
436,229 - +0.4
436,266 + -0.2
436,324 - DVU0388 0.15 -0.1
436,360 - DVU0388 0.20 +0.4
436,360 - DVU0388 0.20 +0.6
436,362 + DVU0388 0.20 -0.3
436,429 + DVU0388 0.29 +0.3
436,429 + DVU0388 0.29 -0.1
436,534 + DVU0388 0.43 +0.4
436,622 - DVU0388 0.54 +0.0
436,627 - DVU0388 0.55 -0.2
436,644 - DVU0388 0.57 -0.3
436,644 - DVU0388 0.57 -0.6
436,681 + DVU0388 0.62 +0.5
436,690 + DVU0388 0.63 -0.1
436,724 + DVU0388 0.68 -0.2
436,731 + DVU0388 0.68 +0.1
436,852 - DVU0388 0.84 -0.7
436,879 + DVU0388 0.88 -0.2
436,976 - +0.3
437,016 + +0.3
437,018 + -0.5
437,071 - DVU0389 0.15 +0.3
437,116 + DVU0389 0.21 -0.5
437,124 - DVU0389 0.23 +0.1
437,154 + DVU0389 0.27 -2.0
437,162 - DVU0389 0.28 -0.8
437,181 + DVU0389 0.31 -1.5
437,181 + DVU0389 0.31 -0.9
437,181 + DVU0389 0.31 -1.3

Or see this region's nucleotide sequence