Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5070.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5069.1 and Xcc-8004.5070.1 overlap by 4 nucleotidesXcc-8004.5070.1 and Xcc-8004.5071.1 are separated by 63 nucleotidesXcc-8004.5071.1 and Xcc-8004.5072.1 are separated by 26 nucleotides Xcc-8004.5069.1: Xcc-8004.5069.1 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 4,807,606 to 4,809,381 Xcc-8004.5069.1 Xcc-8004.5070.1: Xcc-8004.5070.1 - Glucoamylase (EC 3.2.1.3), at 4,809,378 to 4,811,177 Xcc-8004.5070.1 Xcc-8004.5071.1: Xcc-8004.5071.1 - FIG01210955: hypothetical protein, at 4,811,241 to 4,811,570 Xcc-8004.5071.1 Xcc-8004.5072.1: Xcc-8004.5072.1 - Ankyrin-like protein, at 4,811,597 to 4,814,920 Xcc-8004.5072.1 Position (kb) 4809 4810 4811 4812Strain fitness (log2 ratio) -2 -1 0 1 2at 4808.475 kb on - strand, within Xcc-8004.5069.1at 4808.648 kb on + strand, within Xcc-8004.5069.1at 4808.648 kb on + strand, within Xcc-8004.5069.1at 4808.649 kb on - strand, within Xcc-8004.5069.1at 4808.649 kb on - strand, within Xcc-8004.5069.1at 4808.649 kb on - strand, within Xcc-8004.5069.1at 4808.649 kb on - strand, within Xcc-8004.5069.1at 4808.993 kb on + strand, within Xcc-8004.5069.1at 4808.994 kb on - strand, within Xcc-8004.5069.1at 4809.062 kb on + strand, within Xcc-8004.5069.1at 4809.095 kb on + strand, within Xcc-8004.5069.1at 4809.095 kb on + strand, within Xcc-8004.5069.1at 4809.096 kb on - strand, within Xcc-8004.5069.1at 4809.096 kb on - strand, within Xcc-8004.5069.1at 4809.096 kb on - strand, within Xcc-8004.5069.1at 4809.096 kb on - strand, within Xcc-8004.5069.1at 4809.096 kb on - strand, within Xcc-8004.5069.1at 4809.291 kb on - strandat 4809.452 kb on - strandat 4809.496 kb on + strandat 4809.586 kb on + strand, within Xcc-8004.5070.1at 4809.771 kb on + strand, within Xcc-8004.5070.1at 4809.771 kb on + strand, within Xcc-8004.5070.1at 4809.771 kb on + strand, within Xcc-8004.5070.1at 4809.771 kb on + strand, within Xcc-8004.5070.1at 4809.772 kb on - strand, within Xcc-8004.5070.1at 4809.774 kb on + strand, within Xcc-8004.5070.1at 4809.775 kb on - strand, within Xcc-8004.5070.1at 4809.802 kb on + strand, within Xcc-8004.5070.1at 4809.803 kb on - strand, within Xcc-8004.5070.1at 4809.803 kb on - strand, within Xcc-8004.5070.1at 4809.817 kb on + strand, within Xcc-8004.5070.1at 4809.817 kb on + strand, within Xcc-8004.5070.1at 4809.817 kb on + strand, within Xcc-8004.5070.1at 4809.817 kb on + strand, within Xcc-8004.5070.1at 4809.818 kb on - strand, within Xcc-8004.5070.1at 4810.114 kb on + strand, within Xcc-8004.5070.1at 4810.204 kb on + strand, within Xcc-8004.5070.1at 4810.204 kb on + strand, within Xcc-8004.5070.1at 4810.261 kb on + strand, within Xcc-8004.5070.1at 4810.394 kb on - strand, within Xcc-8004.5070.1at 4810.394 kb on - strand, within Xcc-8004.5070.1at 4810.399 kb on + strand, within Xcc-8004.5070.1at 4810.399 kb on + strand, within Xcc-8004.5070.1at 4810.400 kb on - strand, within Xcc-8004.5070.1at 4810.477 kb on + strand, within Xcc-8004.5070.1at 4810.477 kb on + strand, within Xcc-8004.5070.1at 4810.477 kb on + strand, within Xcc-8004.5070.1at 4810.478 kb on - strand, within Xcc-8004.5070.1at 4810.478 kb on - strand, within Xcc-8004.5070.1at 4810.852 kb on - strand, within Xcc-8004.5070.1at 4810.981 kb on + strand, within Xcc-8004.5070.1at 4811.242 kb on + strandat 4811.314 kb on + strand, within Xcc-8004.5071.1at 4811.314 kb on + strand, within Xcc-8004.5071.1at 4811.314 kb on + strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.315 kb on - strand, within Xcc-8004.5071.1at 4811.320 kb on + strand, within Xcc-8004.5071.1at 4811.321 kb on - strand, within Xcc-8004.5071.1at 4811.321 kb on - strand, within Xcc-8004.5071.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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4,808,475 - Xcc-8004.5069.1 0.49 -0.8
4,808,648 + Xcc-8004.5069.1 0.59 -1.8
4,808,648 + Xcc-8004.5069.1 0.59 +0.8
4,808,649 - Xcc-8004.5069.1 0.59 -0.8
4,808,649 - Xcc-8004.5069.1 0.59 -1.4
4,808,649 - Xcc-8004.5069.1 0.59 +0.1
4,808,649 - Xcc-8004.5069.1 0.59 -0.4
4,808,993 + Xcc-8004.5069.1 0.78 -1.3
4,808,994 - Xcc-8004.5069.1 0.78 +0.9
4,809,062 + Xcc-8004.5069.1 0.82 -0.4
4,809,095 + Xcc-8004.5069.1 0.84 -1.1
4,809,095 + Xcc-8004.5069.1 0.84 -0.2
4,809,096 - Xcc-8004.5069.1 0.84 +0.8
4,809,096 - Xcc-8004.5069.1 0.84 -0.3
4,809,096 - Xcc-8004.5069.1 0.84 +0.1
4,809,096 - Xcc-8004.5069.1 0.84 -0.6
4,809,096 - Xcc-8004.5069.1 0.84 +0.5
4,809,291 - +1.2
4,809,452 - -0.2
4,809,496 + -0.2
4,809,586 + Xcc-8004.5070.1 0.12 +0.8
4,809,771 + Xcc-8004.5070.1 0.22 -0.5
4,809,771 + Xcc-8004.5070.1 0.22 -1.1
4,809,771 + Xcc-8004.5070.1 0.22 -0.6
4,809,771 + Xcc-8004.5070.1 0.22 -0.6
4,809,772 - Xcc-8004.5070.1 0.22 +1.0
4,809,774 + Xcc-8004.5070.1 0.22 +0.2
4,809,775 - Xcc-8004.5070.1 0.22 +0.4
4,809,802 + Xcc-8004.5070.1 0.24 -0.6
4,809,803 - Xcc-8004.5070.1 0.24 +0.1
4,809,803 - Xcc-8004.5070.1 0.24 +1.1
4,809,817 + Xcc-8004.5070.1 0.24 +0.2
4,809,817 + Xcc-8004.5070.1 0.24 -1.7
4,809,817 + Xcc-8004.5070.1 0.24 +0.1
4,809,817 + Xcc-8004.5070.1 0.24 +0.2
4,809,818 - Xcc-8004.5070.1 0.24 +0.6
4,810,114 + Xcc-8004.5070.1 0.41 +1.2
4,810,204 + Xcc-8004.5070.1 0.46 -0.0
4,810,204 + Xcc-8004.5070.1 0.46 -1.7
4,810,261 + Xcc-8004.5070.1 0.49 -1.4
4,810,394 - Xcc-8004.5070.1 0.56 -0.2
4,810,394 - Xcc-8004.5070.1 0.56 -0.4
4,810,399 + Xcc-8004.5070.1 0.57 +0.4
4,810,399 + Xcc-8004.5070.1 0.57 +0.0
4,810,400 - Xcc-8004.5070.1 0.57 -1.2
4,810,477 + Xcc-8004.5070.1 0.61 +0.6
4,810,477 + Xcc-8004.5070.1 0.61 -0.0
4,810,477 + Xcc-8004.5070.1 0.61 -1.4
4,810,478 - Xcc-8004.5070.1 0.61 +2.1
4,810,478 - Xcc-8004.5070.1 0.61 +0.4
4,810,852 - Xcc-8004.5070.1 0.82 +1.0
4,810,981 + Xcc-8004.5070.1 0.89 +0.4
4,811,242 + -0.7
4,811,314 + Xcc-8004.5071.1 0.22 +0.6
4,811,314 + Xcc-8004.5071.1 0.22 -0.3
4,811,314 + Xcc-8004.5071.1 0.22 -0.2
4,811,315 - Xcc-8004.5071.1 0.22 -2.1
4,811,315 - Xcc-8004.5071.1 0.22 +1.2
4,811,315 - Xcc-8004.5071.1 0.22 +0.4
4,811,315 - Xcc-8004.5071.1 0.22 +0.7
4,811,315 - Xcc-8004.5071.1 0.22 -1.2
4,811,315 - Xcc-8004.5071.1 0.22 +1.2
4,811,320 + Xcc-8004.5071.1 0.24 +0.2
4,811,321 - Xcc-8004.5071.1 0.24 +0.6
4,811,321 - Xcc-8004.5071.1 0.24 -0.2

Or see this region's nucleotide sequence