Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4933.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4931.1 and Xcc-8004.4933.1 are separated by 289 nucleotidesXcc-8004.4933.1 and Xcc-8004.4934.1 overlap by 1 nucleotides Xcc-8004.4931.1: Xcc-8004.4931.1 - FIG01210460: hypothetical protein, at 4,689,024 to 4,689,953 Xcc-8004.4931.1 Xcc-8004.4933.1: Xcc-8004.4933.1 - Hydrolase or peptidase, at 4,690,243 to 4,691,112 Xcc-8004.4933.1 Xcc-8004.4934.1: Xcc-8004.4934.1 - Biotin carboxylase (EC 6.3.4.14), at 4,691,112 to 4,692,224 Xcc-8004.4934.1 Position (kb) 4690 4691 4692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4689.389 kb on - strand, within Xcc-8004.4931.1at 4689.412 kb on - strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.441 kb on + strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.442 kb on - strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.444 kb on + strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.445 kb on - strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.462 kb on + strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.463 kb on - strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.474 kb on + strand, within Xcc-8004.4931.1at 4689.487 kb on - strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.660 kb on + strand, within Xcc-8004.4931.1at 4689.681 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.723 kb on + strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.724 kb on - strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.729 kb on + strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.730 kb on - strand, within Xcc-8004.4931.1at 4689.739 kb on - strand, within Xcc-8004.4931.1at 4689.750 kb on + strand, within Xcc-8004.4931.1at 4689.751 kb on - strand, within Xcc-8004.4931.1at 4689.952 kb on - strandat 4689.952 kb on - strandat 4689.964 kb on + strandat 4689.964 kb on + strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.965 kb on - strandat 4689.970 kb on + strandat 4689.970 kb on + strandat 4689.971 kb on - strandat 4689.971 kb on - strandat 4689.971 kb on - strandat 4690.102 kb on - strandat 4690.102 kb on - strandat 4690.244 kb on + strandat 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.430 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.523 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.592 kb on + strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.593 kb on - strand, within Xcc-8004.4933.1at 4690.649 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.778 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.787 kb on + strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.788 kb on - strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.826 kb on + strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.827 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.851 kb on - strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.910 kb on + strand, within Xcc-8004.4933.1at 4690.928 kb on - strand, within Xcc-8004.4933.1at 4691.098 kb on + strandat 4691.099 kb on - strandat 4691.099 kb on - strandat 4691.121 kb on - strandat 4691.135 kb on - strandat 4691.135 kb on - strandat 4691.173 kb on + strandat 4691.173 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.176 kb on + strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.177 kb on - strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.209 kb on + strandat 4691.210 kb on - strandat 4691.210 kb on - strandat 4691.210 kb on - strandat 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.371 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.425 kb on + strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.426 kb on - strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.527 kb on + strand, within Xcc-8004.4934.1at 4691.528 kb on - strand, within Xcc-8004.4934.1at 4691.528 kb on - strand, within Xcc-8004.4934.1at 4691.573 kb on - strand, within Xcc-8004.4934.1at 4691.573 kb on - strand, within Xcc-8004.4934.1at 4691.671 kb on + strand, within Xcc-8004.4934.1at 4691.671 kb on + strand, within Xcc-8004.4934.1at 4691.672 kb on - strand, within Xcc-8004.4934.1at 4691.783 kb on + strand, within Xcc-8004.4934.1at 4691.784 kb on - strand, within Xcc-8004.4934.1at 4691.833 kb on + strand, within Xcc-8004.4934.1at 4691.970 kb on + strand, within Xcc-8004.4934.1at 4691.970 kb on + strand, within Xcc-8004.4934.1at 4691.971 kb on - strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.044 kb on + strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1at 4692.045 kb on - strand, within Xcc-8004.4934.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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4,689,389 - Xcc-8004.4931.1 0.39 -0.2
4,689,412 - Xcc-8004.4931.1 0.42 +0.4
4,689,441 + Xcc-8004.4931.1 0.45 -0.5
4,689,441 + Xcc-8004.4931.1 0.45 -0.8
4,689,442 - Xcc-8004.4931.1 0.45 -1.4
4,689,442 - Xcc-8004.4931.1 0.45 -0.6
4,689,444 + Xcc-8004.4931.1 0.45 -0.3
4,689,444 + Xcc-8004.4931.1 0.45 -1.0
4,689,444 + Xcc-8004.4931.1 0.45 -0.1
4,689,444 + Xcc-8004.4931.1 0.45 +0.2
4,689,444 + Xcc-8004.4931.1 0.45 -0.3
4,689,444 + Xcc-8004.4931.1 0.45 -0.4
4,689,444 + Xcc-8004.4931.1 0.45 +1.0
4,689,445 - Xcc-8004.4931.1 0.45 -0.1
4,689,445 - Xcc-8004.4931.1 0.45 -0.6
4,689,445 - Xcc-8004.4931.1 0.45 -0.7
4,689,445 - Xcc-8004.4931.1 0.45 -0.2
4,689,445 - Xcc-8004.4931.1 0.45 -0.3
4,689,445 - Xcc-8004.4931.1 0.45 -0.7
4,689,445 - Xcc-8004.4931.1 0.45 -0.3
4,689,462 + Xcc-8004.4931.1 0.47 +0.2
4,689,462 + Xcc-8004.4931.1 0.47 +0.1
4,689,463 - Xcc-8004.4931.1 0.47 +0.6
4,689,463 - Xcc-8004.4931.1 0.47 -1.3
4,689,474 + Xcc-8004.4931.1 0.48 +1.6
4,689,474 + Xcc-8004.4931.1 0.48 -0.2
4,689,487 - Xcc-8004.4931.1 0.50 -0.9
4,689,660 + Xcc-8004.4931.1 0.68 +0.9
4,689,660 + Xcc-8004.4931.1 0.68 +0.6
4,689,681 + Xcc-8004.4931.1 0.71 -0.6
4,689,723 + Xcc-8004.4931.1 0.75 -0.2
4,689,723 + Xcc-8004.4931.1 0.75 -1.0
4,689,723 + Xcc-8004.4931.1 0.75 +0.0
4,689,724 - Xcc-8004.4931.1 0.75 +0.1
4,689,724 - Xcc-8004.4931.1 0.75 +0.9
4,689,724 - Xcc-8004.4931.1 0.75 +0.1
4,689,729 + Xcc-8004.4931.1 0.76 +0.9
4,689,729 + Xcc-8004.4931.1 0.76 +0.2
4,689,729 + Xcc-8004.4931.1 0.76 -0.2
4,689,729 + Xcc-8004.4931.1 0.76 -0.1
4,689,730 - Xcc-8004.4931.1 0.76 +0.3
4,689,730 - Xcc-8004.4931.1 0.76 +0.0
4,689,739 - Xcc-8004.4931.1 0.77 +0.5
4,689,750 + Xcc-8004.4931.1 0.78 -0.7
4,689,751 - Xcc-8004.4931.1 0.78 -1.0
4,689,952 - -0.8
4,689,952 - -2.4
4,689,964 + +1.5
4,689,964 + -0.6
4,689,965 - -0.6
4,689,965 - +1.0
4,689,965 - -0.5
4,689,965 - +0.5
4,689,965 - -0.3
4,689,970 + +0.3
4,689,970 + -1.2
4,689,971 - -0.6
4,689,971 - +0.4
4,689,971 - -0.6
4,690,102 - +0.3
4,690,102 - +0.2
4,690,244 + +0.1
4,690,430 + Xcc-8004.4933.1 0.21 -0.3
4,690,430 + Xcc-8004.4933.1 0.21 -2.3
4,690,523 + Xcc-8004.4933.1 0.32 -2.5
4,690,523 + Xcc-8004.4933.1 0.32 -2.6
4,690,592 + Xcc-8004.4933.1 0.40 -1.1
4,690,592 + Xcc-8004.4933.1 0.40 -1.9
4,690,592 + Xcc-8004.4933.1 0.40 -3.0
4,690,592 + Xcc-8004.4933.1 0.40 -2.8
4,690,592 + Xcc-8004.4933.1 0.40 -1.9
4,690,592 + Xcc-8004.4933.1 0.40 -1.6
4,690,592 + Xcc-8004.4933.1 0.40 -1.0
4,690,592 + Xcc-8004.4933.1 0.40 -2.6
4,690,593 - Xcc-8004.4933.1 0.40 -0.9
4,690,593 - Xcc-8004.4933.1 0.40 -2.7
4,690,593 - Xcc-8004.4933.1 0.40 +0.3
4,690,649 + Xcc-8004.4933.1 0.47 -2.8
4,690,778 + Xcc-8004.4933.1 0.61 -1.0
4,690,778 + Xcc-8004.4933.1 0.61 -4.4
4,690,787 + Xcc-8004.4933.1 0.63 -1.3
4,690,787 + Xcc-8004.4933.1 0.63 -2.3
4,690,787 + Xcc-8004.4933.1 0.63 -2.6
4,690,788 - Xcc-8004.4933.1 0.63 -2.8
4,690,788 - Xcc-8004.4933.1 0.63 -3.3
4,690,788 - Xcc-8004.4933.1 0.63 -2.0
4,690,788 - Xcc-8004.4933.1 0.63 -1.3
4,690,788 - Xcc-8004.4933.1 0.63 -2.3
4,690,826 + Xcc-8004.4933.1 0.67 -0.4
4,690,826 + Xcc-8004.4933.1 0.67 -0.6
4,690,826 + Xcc-8004.4933.1 0.67 -1.0
4,690,827 - Xcc-8004.4933.1 0.67 -0.6
4,690,827 - Xcc-8004.4933.1 0.67 -3.3
4,690,851 - Xcc-8004.4933.1 0.70 -1.9
4,690,851 - Xcc-8004.4933.1 0.70 -1.8
4,690,910 + Xcc-8004.4933.1 0.77 -2.1
4,690,910 + Xcc-8004.4933.1 0.77 -2.9
4,690,910 + Xcc-8004.4933.1 0.77 -4.1
4,690,910 + Xcc-8004.4933.1 0.77 -2.7
4,690,928 - Xcc-8004.4933.1 0.79 -2.3
4,691,098 + -3.2
4,691,099 - -1.8
4,691,099 - -2.8
4,691,121 - -0.3
4,691,135 - +0.8
4,691,135 - -0.0
4,691,173 + +0.1
4,691,173 + -1.3
4,691,176 + +0.6
4,691,176 + +1.0
4,691,176 + +0.3
4,691,176 + +0.9
4,691,176 + -0.5
4,691,176 + +1.1
4,691,176 + -0.6
4,691,176 + +0.8
4,691,177 - +0.9
4,691,177 - +0.1
4,691,177 - -0.0
4,691,177 - +0.1
4,691,209 + +0.6
4,691,209 + -0.3
4,691,209 + -0.4
4,691,209 + -1.8
4,691,209 + +0.2
4,691,209 + -0.2
4,691,210 - +1.1
4,691,210 - +0.1
4,691,210 - +0.7
4,691,371 + Xcc-8004.4934.1 0.23 -0.8
4,691,371 + Xcc-8004.4934.1 0.23 +1.6
4,691,371 + Xcc-8004.4934.1 0.23 +0.3
4,691,425 + Xcc-8004.4934.1 0.28 +0.2
4,691,425 + Xcc-8004.4934.1 0.28 +0.4
4,691,425 + Xcc-8004.4934.1 0.28 -1.9
4,691,426 - Xcc-8004.4934.1 0.28 +0.6
4,691,426 - Xcc-8004.4934.1 0.28 -1.1
4,691,426 - Xcc-8004.4934.1 0.28 +0.3
4,691,527 + Xcc-8004.4934.1 0.37 +1.7
4,691,527 + Xcc-8004.4934.1 0.37 -0.8
4,691,527 + Xcc-8004.4934.1 0.37 -0.1
4,691,527 + Xcc-8004.4934.1 0.37 +0.3
4,691,527 + Xcc-8004.4934.1 0.37 +0.5
4,691,527 + Xcc-8004.4934.1 0.37 +0.5
4,691,528 - Xcc-8004.4934.1 0.37 -2.1
4,691,528 - Xcc-8004.4934.1 0.37 +0.3
4,691,573 - Xcc-8004.4934.1 0.41 +0.4
4,691,573 - Xcc-8004.4934.1 0.41 +0.6
4,691,671 + Xcc-8004.4934.1 0.50 -0.2
4,691,671 + Xcc-8004.4934.1 0.50 +0.0
4,691,672 - Xcc-8004.4934.1 0.50 +0.3
4,691,783 + Xcc-8004.4934.1 0.60 -1.0
4,691,784 - Xcc-8004.4934.1 0.60 -0.5
4,691,833 + Xcc-8004.4934.1 0.65 -0.8
4,691,970 + Xcc-8004.4934.1 0.77 +1.3
4,691,970 + Xcc-8004.4934.1 0.77 +0.0
4,691,971 - Xcc-8004.4934.1 0.77 +0.2
4,692,044 + Xcc-8004.4934.1 0.84 +0.8
4,692,044 + Xcc-8004.4934.1 0.84 -0.5
4,692,044 + Xcc-8004.4934.1 0.84 +1.1
4,692,044 + Xcc-8004.4934.1 0.84 +0.4
4,692,045 - Xcc-8004.4934.1 0.84 +0.6
4,692,045 - Xcc-8004.4934.1 0.84 +0.3
4,692,045 - Xcc-8004.4934.1 0.84 +0.0

Or see this region's nucleotide sequence