Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4305.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4304.1 and Xcc-8004.4305.1 are separated by 243 nucleotidesXcc-8004.4305.1 and Xcc-8004.4306.1 are separated by 265 nucleotidesXcc-8004.4306.1 and Xcc-8004.4307.1 are separated by 499 nucleotides Xcc-8004.4304.1: Xcc-8004.4304.1 - FIG01210543: hypothetical protein, at 4,120,988 to 4,122,070 Xcc-8004.4304.1 Xcc-8004.4305.1: Xcc-8004.4305.1 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 4,122,314 to 4,123,525 Xcc-8004.4305.1 Xcc-8004.4306.1: Xcc-8004.4306.1 - hypothetical protein, at 4,123,791 to 4,123,988 Xcc-8004.4306.1 Xcc-8004.4307.1: Xcc-8004.4307.1 - Probable histidine acid phosphatase (EC 3.1.3.2), at 4,124,488 to 4,125,819 Xcc-8004.4307.1 Position (kb) 4122 4123 4124Strain fitness (log2 ratio) -2 -1 0 1at 4121.410 kb on - strand, within Xcc-8004.4304.1at 4121.410 kb on - strand, within Xcc-8004.4304.1at 4121.562 kb on + strand, within Xcc-8004.4304.1at 4121.563 kb on - strand, within Xcc-8004.4304.1at 4121.563 kb on - strand, within Xcc-8004.4304.1at 4121.665 kb on - strand, within Xcc-8004.4304.1at 4121.714 kb on + strand, within Xcc-8004.4304.1at 4121.739 kb on + strand, within Xcc-8004.4304.1at 4121.739 kb on + strand, within Xcc-8004.4304.1at 4121.740 kb on - strand, within Xcc-8004.4304.1at 4122.090 kb on + strandat 4122.090 kb on + strandat 4122.091 kb on - strandat 4122.091 kb on - strandat 4122.091 kb on - strandat 4122.176 kb on + strandat 4122.176 kb on + strandat 4122.177 kb on - strandat 4122.177 kb on - strandat 4122.267 kb on + strandat 4122.268 kb on - strandat 4123.523 kb on + strandat 4123.623 kb on - strandat 4123.663 kb on - strandat 4123.678 kb on - strandat 4123.761 kb on + strandat 4123.761 kb on + strandat 4123.761 kb on + strandat 4123.762 kb on - strandat 4123.771 kb on + strandat 4123.772 kb on - strandat 4123.772 kb on - strandat 4123.799 kb on + strandat 4123.892 kb on - strand, within Xcc-8004.4306.1at 4123.892 kb on - strand, within Xcc-8004.4306.1at 4123.921 kb on + strand, within Xcc-8004.4306.1at 4123.969 kb on + strandat 4124.032 kb on - strandat 4124.032 kb on - strandat 4124.139 kb on - strandat 4124.241 kb on + strandat 4124.241 kb on + strandat 4124.303 kb on + strandat 4124.304 kb on - strandat 4124.304 kb on - strandat 4124.304 kb on - strandat 4124.304 kb on - strandat 4124.321 kb on + strandat 4124.322 kb on - strandat 4124.375 kb on + strandat 4124.376 kb on - strandat 4124.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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4,121,410 - Xcc-8004.4304.1 0.39 -0.3
4,121,410 - Xcc-8004.4304.1 0.39 -1.5
4,121,562 + Xcc-8004.4304.1 0.53 +0.6
4,121,563 - Xcc-8004.4304.1 0.53 -0.7
4,121,563 - Xcc-8004.4304.1 0.53 +1.0
4,121,665 - Xcc-8004.4304.1 0.63 -1.0
4,121,714 + Xcc-8004.4304.1 0.67 -1.2
4,121,739 + Xcc-8004.4304.1 0.69 -0.7
4,121,739 + Xcc-8004.4304.1 0.69 -0.1
4,121,740 - Xcc-8004.4304.1 0.69 -0.5
4,122,090 + -2.7
4,122,090 + -0.5
4,122,091 - -0.4
4,122,091 - -0.2
4,122,091 - -1.9
4,122,176 + -1.8
4,122,176 + -1.6
4,122,177 - -1.0
4,122,177 - +0.2
4,122,267 + -1.3
4,122,268 - +0.6
4,123,523 + -0.4
4,123,623 - -0.4
4,123,663 - +0.6
4,123,678 - -0.1
4,123,761 + -0.6
4,123,761 + +0.3
4,123,761 + -1.1
4,123,762 - +0.8
4,123,771 + -0.9
4,123,772 - -1.2
4,123,772 - +0.5
4,123,799 + -0.1
4,123,892 - Xcc-8004.4306.1 0.51 +1.0
4,123,892 - Xcc-8004.4306.1 0.51 +0.2
4,123,921 + Xcc-8004.4306.1 0.66 -0.3
4,123,969 + +0.4
4,124,032 - +0.7
4,124,032 - +0.3
4,124,139 - +1.3
4,124,241 + +0.0
4,124,241 + -1.1
4,124,303 + -0.5
4,124,304 - -0.1
4,124,304 - -0.2
4,124,304 - -0.4
4,124,304 - -0.2
4,124,321 + -2.3
4,124,322 - -0.3
4,124,375 + +0.2
4,124,376 - +0.0
4,124,399 - +1.3

Or see this region's nucleotide sequence