Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4214.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4213.1 and Xcc-8004.4214.1 are separated by 130 nucleotidesXcc-8004.4214.1 and Xcc-8004.4215.1 overlap by 4 nucleotidesXcc-8004.4215.1 and Xcc-8004.4216.1 overlap by 4 nucleotides Xcc-8004.4213.1: Xcc-8004.4213.1 - Thymidine phosphorylase (EC 2.4.2.4), at 4,040,119 to 4,042,332 Xcc-8004.4213.1 Xcc-8004.4214.1: Xcc-8004.4214.1 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 4,042,463 to 4,043,038 Xcc-8004.4214.1 Xcc-8004.4215.1: Xcc-8004.4215.1 - DNA polymerase I 5'-3' exonuclease domain, at 4,043,035 to 4,044,033 Xcc-8004.4215.1 Xcc-8004.4216.1: Xcc-8004.4216.1 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,044,030 to 4,044,581 Xcc-8004.4216.1 Position (kb) 4042 4043 4044Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.734 kb on + strand, within Xcc-8004.4213.1at 4041.735 kb on - strand, within Xcc-8004.4213.1at 4041.830 kb on + strand, within Xcc-8004.4213.1at 4041.830 kb on + strand, within Xcc-8004.4213.1at 4041.830 kb on + strand, within Xcc-8004.4213.1at 4041.830 kb on + strand, within Xcc-8004.4213.1at 4041.830 kb on + strand, within Xcc-8004.4213.1at 4041.911 kb on + strand, within Xcc-8004.4213.1at 4041.911 kb on + strand, within Xcc-8004.4213.1at 4042.430 kb on + strandat 4042.430 kb on + strandat 4042.430 kb on + strandat 4042.430 kb on + strandat 4042.430 kb on + strandat 4042.430 kb on + strandat 4042.431 kb on - strandat 4042.431 kb on - strandat 4042.431 kb on - strandat 4042.431 kb on - strandat 4042.432 kb on + strandat 4042.432 kb on + strandat 4042.433 kb on - strandat 4042.433 kb on - strandat 4042.433 kb on - strandat 4042.462 kb on + strandat 4042.462 kb on + strandat 4042.462 kb on + strandat 4042.462 kb on + strandat 4042.462 kb on + strandat 4042.462 kb on + strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.463 kb on - strandat 4042.475 kb on + strandat 4042.476 kb on - strandat 4042.476 kb on - strandat 4042.476 kb on - strandat 4042.557 kb on + strand, within Xcc-8004.4214.1at 4042.558 kb on - strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.567 kb on + strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.568 kb on - strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.749 kb on + strand, within Xcc-8004.4214.1at 4042.750 kb on - strand, within Xcc-8004.4214.1at 4042.750 kb on - strand, within Xcc-8004.4214.1at 4042.750 kb on - strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.753 kb on + strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.754 kb on - strand, within Xcc-8004.4214.1at 4042.895 kb on + strand, within Xcc-8004.4214.1at 4042.895 kb on + strand, within Xcc-8004.4214.1at 4042.896 kb on - strand, within Xcc-8004.4214.1at 4042.896 kb on - strand, within Xcc-8004.4214.1at 4042.896 kb on - strand, within Xcc-8004.4214.1at 4042.896 kb on - strand, within Xcc-8004.4214.1at 4042.896 kb on - strand, within Xcc-8004.4214.1at 4042.916 kb on + strand, within Xcc-8004.4214.1at 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.110 kb on + strandat 4043.111 kb on - strandat 4043.111 kb on - strandat 4043.111 kb on - strandat 4043.111 kb on - strandat 4043.111 kb on - strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.131 kb on + strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.132 kb on - strandat 4043.308 kb on + strand, within Xcc-8004.4215.1at 4043.309 kb on - strand, within Xcc-8004.4215.1at 4043.309 kb on - strand, within Xcc-8004.4215.1at 4043.309 kb on - strand, within Xcc-8004.4215.1at 4043.309 kb on - strand, within Xcc-8004.4215.1at 4043.309 kb on - strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.317 kb on + strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.318 kb on - strand, within Xcc-8004.4215.1at 4043.422 kb on + strand, within Xcc-8004.4215.1at 4043.422 kb on + strand, within Xcc-8004.4215.1at 4043.423 kb on - strand, within Xcc-8004.4215.1at 4043.423 kb on - strand, within Xcc-8004.4215.1at 4043.548 kb on + strand, within Xcc-8004.4215.1at 4043.548 kb on + strand, within Xcc-8004.4215.1at 4043.549 kb on - strand, within Xcc-8004.4215.1at 4043.624 kb on - strand, within Xcc-8004.4215.1at 4043.624 kb on - strand, within Xcc-8004.4215.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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4,041,734 + Xcc-8004.4213.1 0.73 +0.0
4,041,734 + Xcc-8004.4213.1 0.73 -0.2
4,041,734 + Xcc-8004.4213.1 0.73 -0.2
4,041,734 + Xcc-8004.4213.1 0.73 -1.8
4,041,734 + Xcc-8004.4213.1 0.73 +0.5
4,041,734 + Xcc-8004.4213.1 0.73 +0.0
4,041,734 + Xcc-8004.4213.1 0.73 +0.5
4,041,734 + Xcc-8004.4213.1 0.73 -0.6
4,041,734 + Xcc-8004.4213.1 0.73 +0.4
4,041,734 + Xcc-8004.4213.1 0.73 +0.0
4,041,735 - Xcc-8004.4213.1 0.73 -0.5
4,041,830 + Xcc-8004.4213.1 0.77 -0.5
4,041,830 + Xcc-8004.4213.1 0.77 -1.1
4,041,830 + Xcc-8004.4213.1 0.77 +0.0
4,041,830 + Xcc-8004.4213.1 0.77 -0.1
4,041,830 + Xcc-8004.4213.1 0.77 +1.2
4,041,911 + Xcc-8004.4213.1 0.81 -0.0
4,041,911 + Xcc-8004.4213.1 0.81 -0.8
4,042,430 + +1.1
4,042,430 + +0.3
4,042,430 + +0.2
4,042,430 + +1.3
4,042,430 + +1.0
4,042,430 + +1.4
4,042,431 - +0.6
4,042,431 - -0.9
4,042,431 - -0.5
4,042,431 - +0.2
4,042,432 + -0.7
4,042,432 + +0.5
4,042,433 - +0.0
4,042,433 - -0.4
4,042,433 - +0.4
4,042,462 + +1.7
4,042,462 + +0.1
4,042,462 + +0.1
4,042,462 + +0.9
4,042,462 + +0.5
4,042,462 + -0.4
4,042,463 - -1.4
4,042,463 - -0.7
4,042,463 - +1.2
4,042,463 - +0.3
4,042,463 - +0.4
4,042,463 - +0.2
4,042,463 - +0.9
4,042,463 - -0.7
4,042,475 + +0.1
4,042,476 - -0.0
4,042,476 - -0.3
4,042,476 - -0.1
4,042,557 + Xcc-8004.4214.1 0.16 +0.6
4,042,558 - Xcc-8004.4214.1 0.16 -1.3
4,042,567 + Xcc-8004.4214.1 0.18 -0.1
4,042,567 + Xcc-8004.4214.1 0.18 +1.5
4,042,567 + Xcc-8004.4214.1 0.18 +1.0
4,042,567 + Xcc-8004.4214.1 0.18 +0.2
4,042,567 + Xcc-8004.4214.1 0.18 -0.0
4,042,567 + Xcc-8004.4214.1 0.18 -0.4
4,042,567 + Xcc-8004.4214.1 0.18 +0.2
4,042,567 + Xcc-8004.4214.1 0.18 +0.3
4,042,567 + Xcc-8004.4214.1 0.18 +1.0
4,042,567 + Xcc-8004.4214.1 0.18 -0.1
4,042,567 + Xcc-8004.4214.1 0.18 -0.6
4,042,568 - Xcc-8004.4214.1 0.18 -2.1
4,042,568 - Xcc-8004.4214.1 0.18 -2.5
4,042,568 - Xcc-8004.4214.1 0.18 -0.2
4,042,568 - Xcc-8004.4214.1 0.18 +0.0
4,042,568 - Xcc-8004.4214.1 0.18 +0.7
4,042,568 - Xcc-8004.4214.1 0.18 -0.7
4,042,568 - Xcc-8004.4214.1 0.18 +0.0
4,042,568 - Xcc-8004.4214.1 0.18 -0.0
4,042,568 - Xcc-8004.4214.1 0.18 -1.2
4,042,568 - Xcc-8004.4214.1 0.18 -0.6
4,042,568 - Xcc-8004.4214.1 0.18 +0.0
4,042,568 - Xcc-8004.4214.1 0.18 -0.1
4,042,568 - Xcc-8004.4214.1 0.18 -0.9
4,042,749 + Xcc-8004.4214.1 0.50 +0.6
4,042,749 + Xcc-8004.4214.1 0.50 +0.1
4,042,749 + Xcc-8004.4214.1 0.50 -0.8
4,042,749 + Xcc-8004.4214.1 0.50 +1.2
4,042,749 + Xcc-8004.4214.1 0.50 +0.5
4,042,749 + Xcc-8004.4214.1 0.50 +1.3
4,042,749 + Xcc-8004.4214.1 0.50 +0.7
4,042,749 + Xcc-8004.4214.1 0.50 -0.5
4,042,750 - Xcc-8004.4214.1 0.50 -0.0
4,042,750 - Xcc-8004.4214.1 0.50 -0.1
4,042,750 - Xcc-8004.4214.1 0.50 -0.9
4,042,753 + Xcc-8004.4214.1 0.50 +0.7
4,042,753 + Xcc-8004.4214.1 0.50 +0.3
4,042,753 + Xcc-8004.4214.1 0.50 +0.2
4,042,753 + Xcc-8004.4214.1 0.50 +0.3
4,042,753 + Xcc-8004.4214.1 0.50 +0.8
4,042,753 + Xcc-8004.4214.1 0.50 +0.6
4,042,753 + Xcc-8004.4214.1 0.50 +0.2
4,042,753 + Xcc-8004.4214.1 0.50 +0.9
4,042,753 + Xcc-8004.4214.1 0.50 +0.4
4,042,753 + Xcc-8004.4214.1 0.50 +0.6
4,042,753 + Xcc-8004.4214.1 0.50 +0.0
4,042,753 + Xcc-8004.4214.1 0.50 -0.1
4,042,754 - Xcc-8004.4214.1 0.51 +0.2
4,042,754 - Xcc-8004.4214.1 0.51 +0.9
4,042,754 - Xcc-8004.4214.1 0.51 -1.5
4,042,754 - Xcc-8004.4214.1 0.51 +0.0
4,042,754 - Xcc-8004.4214.1 0.51 -0.2
4,042,754 - Xcc-8004.4214.1 0.51 -0.9
4,042,754 - Xcc-8004.4214.1 0.51 +1.6
4,042,754 - Xcc-8004.4214.1 0.51 -0.4
4,042,895 + Xcc-8004.4214.1 0.75 +0.6
4,042,895 + Xcc-8004.4214.1 0.75 +1.2
4,042,896 - Xcc-8004.4214.1 0.75 +1.0
4,042,896 - Xcc-8004.4214.1 0.75 -0.1
4,042,896 - Xcc-8004.4214.1 0.75 -0.1
4,042,896 - Xcc-8004.4214.1 0.75 +0.1
4,042,896 - Xcc-8004.4214.1 0.75 -0.9
4,042,916 + Xcc-8004.4214.1 0.79 -0.0
4,043,110 + -0.2
4,043,110 + -0.2
4,043,110 + -2.4
4,043,110 + +0.8
4,043,110 + +0.7
4,043,110 + +0.4
4,043,110 + -0.4
4,043,110 + -0.1
4,043,110 + -1.4
4,043,110 + +0.6
4,043,111 - -0.8
4,043,111 - -1.4
4,043,111 - -0.9
4,043,111 - +0.0
4,043,111 - -0.1
4,043,131 + -1.2
4,043,131 + -0.1
4,043,131 + +0.0
4,043,131 + -1.8
4,043,131 + +0.1
4,043,131 + -0.0
4,043,131 + +1.8
4,043,131 + -1.0
4,043,131 + +0.0
4,043,131 + +0.8
4,043,132 - -1.4
4,043,132 - -3.9
4,043,132 - +0.7
4,043,132 - +0.8
4,043,132 - -1.5
4,043,132 - -1.0
4,043,132 - -1.4
4,043,132 - -1.6
4,043,132 - +0.2
4,043,308 + Xcc-8004.4215.1 0.27 +0.4
4,043,309 - Xcc-8004.4215.1 0.27 -1.1
4,043,309 - Xcc-8004.4215.1 0.27 -0.2
4,043,309 - Xcc-8004.4215.1 0.27 -0.7
4,043,309 - Xcc-8004.4215.1 0.27 -0.1
4,043,309 - Xcc-8004.4215.1 0.27 +1.2
4,043,317 + Xcc-8004.4215.1 0.28 -0.4
4,043,317 + Xcc-8004.4215.1 0.28 +0.0
4,043,317 + Xcc-8004.4215.1 0.28 +0.6
4,043,317 + Xcc-8004.4215.1 0.28 +0.4
4,043,317 + Xcc-8004.4215.1 0.28 -0.1
4,043,317 + Xcc-8004.4215.1 0.28 -0.1
4,043,317 + Xcc-8004.4215.1 0.28 -0.0
4,043,317 + Xcc-8004.4215.1 0.28 -0.6
4,043,317 + Xcc-8004.4215.1 0.28 +1.6
4,043,317 + Xcc-8004.4215.1 0.28 +0.6
4,043,317 + Xcc-8004.4215.1 0.28 +0.0
4,043,317 + Xcc-8004.4215.1 0.28 -0.3
4,043,317 + Xcc-8004.4215.1 0.28 +2.6
4,043,317 + Xcc-8004.4215.1 0.28 -0.3
4,043,317 + Xcc-8004.4215.1 0.28 -1.0
4,043,317 + Xcc-8004.4215.1 0.28 -1.0
4,043,317 + Xcc-8004.4215.1 0.28 -0.9
4,043,317 + Xcc-8004.4215.1 0.28 -0.5
4,043,317 + Xcc-8004.4215.1 0.28 -1.7
4,043,317 + Xcc-8004.4215.1 0.28 -0.1
4,043,317 + Xcc-8004.4215.1 0.28 -0.5
4,043,317 + Xcc-8004.4215.1 0.28 -0.2
4,043,318 - Xcc-8004.4215.1 0.28 +0.1
4,043,318 - Xcc-8004.4215.1 0.28 +0.4
4,043,318 - Xcc-8004.4215.1 0.28 +1.1
4,043,318 - Xcc-8004.4215.1 0.28 -0.5
4,043,318 - Xcc-8004.4215.1 0.28 -0.8
4,043,318 - Xcc-8004.4215.1 0.28 -2.0
4,043,318 - Xcc-8004.4215.1 0.28 +0.8
4,043,318 - Xcc-8004.4215.1 0.28 +0.9
4,043,318 - Xcc-8004.4215.1 0.28 -2.0
4,043,318 - Xcc-8004.4215.1 0.28 +0.0
4,043,318 - Xcc-8004.4215.1 0.28 +0.8
4,043,318 - Xcc-8004.4215.1 0.28 -0.3
4,043,318 - Xcc-8004.4215.1 0.28 -0.1
4,043,422 + Xcc-8004.4215.1 0.39 -0.8
4,043,422 + Xcc-8004.4215.1 0.39 -0.6
4,043,423 - Xcc-8004.4215.1 0.39 -0.4
4,043,423 - Xcc-8004.4215.1 0.39 -0.9
4,043,548 + Xcc-8004.4215.1 0.51 +0.4
4,043,548 + Xcc-8004.4215.1 0.51 +0.4
4,043,549 - Xcc-8004.4215.1 0.51 -0.2
4,043,624 - Xcc-8004.4215.1 0.59 -0.5
4,043,624 - Xcc-8004.4215.1 0.59 -0.6

Or see this region's nucleotide sequence