Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3659.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3657.1 and Xcc-8004.3658.1 overlap by 11 nucleotidesXcc-8004.3658.1 and Xcc-8004.3659.1 are separated by 95 nucleotidesXcc-8004.3659.1 and Xcc-8004.3660.1 are separated by 96 nucleotidesXcc-8004.3660.1 and Xcc-8004.3661.1 are separated by 86 nucleotides Xcc-8004.3657.1: Xcc-8004.3657.1 - FIG003033: Helicase domain protein, at 3,535,877 to 3,538,369 Xcc-8004.3657.1 Xcc-8004.3658.1: Xcc-8004.3658.1 - FIG006285: ICC-like protein phosphoesterase, at 3,538,359 to 3,539,003 Xcc-8004.3658.1 Xcc-8004.3659.1: Xcc-8004.3659.1 - Oxidoreductase, at 3,539,099 to 3,540,370 Xcc-8004.3659.1 Xcc-8004.3660.1: Xcc-8004.3660.1 - Cold shock protein CspD, at 3,540,467 to 3,540,673 Xcc-8004.3660.1 Xcc-8004.3661.1: Xcc-8004.3661.1 - 5'-methylthioadenosine phosphorylase (EC 2.4.2.28), at 3,540,760 to 3,541,512 Xcc-8004.3661.1 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -3 -2 -1 0 1at 3538.100 kb on + strand, within Xcc-8004.3657.1at 3538.100 kb on + strand, within Xcc-8004.3657.1at 3538.101 kb on - strand, within Xcc-8004.3657.1at 3538.101 kb on - strand, within Xcc-8004.3657.1at 3538.101 kb on - strand, within Xcc-8004.3657.1at 3538.101 kb on - strand, within Xcc-8004.3657.1at 3538.400 kb on - strandat 3539.100 kb on + strandat 3539.100 kb on + strandat 3539.126 kb on - strandat 3539.349 kb on + strand, within Xcc-8004.3659.1at 3539.349 kb on + strand, within Xcc-8004.3659.1at 3539.350 kb on - strand, within Xcc-8004.3659.1at 3539.350 kb on - strand, within Xcc-8004.3659.1at 3539.383 kb on - strand, within Xcc-8004.3659.1at 3539.708 kb on + strand, within Xcc-8004.3659.1at 3539.779 kb on - strand, within Xcc-8004.3659.1at 3539.779 kb on - strand, within Xcc-8004.3659.1at 3539.779 kb on - strand, within Xcc-8004.3659.1at 3539.779 kb on - strand, within Xcc-8004.3659.1at 3539.802 kb on + strand, within Xcc-8004.3659.1at 3539.802 kb on + strand, within Xcc-8004.3659.1at 3539.803 kb on - strand, within Xcc-8004.3659.1at 3539.803 kb on - strand, within Xcc-8004.3659.1at 3539.850 kb on + strand, within Xcc-8004.3659.1at 3539.850 kb on + strand, within Xcc-8004.3659.1at 3539.850 kb on + strand, within Xcc-8004.3659.1at 3539.850 kb on + strand, within Xcc-8004.3659.1at 3539.851 kb on - strand, within Xcc-8004.3659.1at 3539.851 kb on - strand, within Xcc-8004.3659.1at 3539.929 kb on - strand, within Xcc-8004.3659.1at 3540.144 kb on + strand, within Xcc-8004.3659.1at 3540.144 kb on + strand, within Xcc-8004.3659.1at 3540.144 kb on + strand, within Xcc-8004.3659.1at 3540.144 kb on + strand, within Xcc-8004.3659.1at 3540.144 kb on + strand, within Xcc-8004.3659.1at 3540.145 kb on - strand, within Xcc-8004.3659.1at 3540.145 kb on - strand, within Xcc-8004.3659.1at 3540.145 kb on - strand, within Xcc-8004.3659.1at 3540.145 kb on - strand, within Xcc-8004.3659.1at 3540.525 kb on + strand, within Xcc-8004.3660.1at 3540.525 kb on + strand, within Xcc-8004.3660.1at 3540.525 kb on + strand, within Xcc-8004.3660.1at 3540.525 kb on + strand, within Xcc-8004.3660.1at 3540.526 kb on - strand, within Xcc-8004.3660.1at 3540.526 kb on - strand, within Xcc-8004.3660.1at 3540.526 kb on - strand, within Xcc-8004.3660.1at 3540.526 kb on - strand, within Xcc-8004.3660.1at 3540.526 kb on - strand, within Xcc-8004.3660.1at 3540.710 kb on + strandat 3540.710 kb on + strandat 3540.710 kb on + strandat 3540.711 kb on - strandat 3540.734 kb on - strandat 3540.744 kb on + strandat 3540.744 kb on + strandat 3540.744 kb on + strandat 3540.744 kb on + strandat 3540.745 kb on - strandat 3540.745 kb on - strandat 3540.745 kb on - strandat 3540.745 kb on - strandat 3540.899 kb on + strand, within Xcc-8004.3661.1at 3540.900 kb on - strand, within Xcc-8004.3661.1at 3541.028 kb on + strand, within Xcc-8004.3661.1at 3541.029 kb on - strand, within Xcc-8004.3661.1at 3541.029 kb on - strand, within Xcc-8004.3661.1at 3541.029 kb on - strand, within Xcc-8004.3661.1at 3541.029 kb on - strand, within Xcc-8004.3661.1at 3541.103 kb on + strand, within Xcc-8004.3661.1at 3541.104 kb on - strand, within Xcc-8004.3661.1at 3541.178 kb on + strand, within Xcc-8004.3661.1at 3541.179 kb on - strand, within Xcc-8004.3661.1at 3541.179 kb on - strand, within Xcc-8004.3661.1at 3541.179 kb on - strand, within Xcc-8004.3661.1at 3541.304 kb on + strand, within Xcc-8004.3661.1at 3541.304 kb on + strand, within Xcc-8004.3661.1at 3541.305 kb on - strand, within Xcc-8004.3661.1at 3541.305 kb on - strand, within Xcc-8004.3661.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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3,538,100 + Xcc-8004.3657.1 0.89 +0.0
3,538,100 + Xcc-8004.3657.1 0.89 +0.6
3,538,101 - Xcc-8004.3657.1 0.89 +0.3
3,538,101 - Xcc-8004.3657.1 0.89 +0.0
3,538,101 - Xcc-8004.3657.1 0.89 +0.5
3,538,101 - Xcc-8004.3657.1 0.89 +0.2
3,538,400 - +1.1
3,539,100 + -0.3
3,539,100 + -0.4
3,539,126 - +0.3
3,539,349 + Xcc-8004.3659.1 0.20 +0.6
3,539,349 + Xcc-8004.3659.1 0.20 -1.2
3,539,350 - Xcc-8004.3659.1 0.20 +0.6
3,539,350 - Xcc-8004.3659.1 0.20 -0.4
3,539,383 - Xcc-8004.3659.1 0.22 +0.3
3,539,708 + Xcc-8004.3659.1 0.48 +0.1
3,539,779 - Xcc-8004.3659.1 0.53 -0.4
3,539,779 - Xcc-8004.3659.1 0.53 +0.0
3,539,779 - Xcc-8004.3659.1 0.53 -0.1
3,539,779 - Xcc-8004.3659.1 0.53 -1.3
3,539,802 + Xcc-8004.3659.1 0.55 +0.3
3,539,802 + Xcc-8004.3659.1 0.55 -0.6
3,539,803 - Xcc-8004.3659.1 0.55 -0.3
3,539,803 - Xcc-8004.3659.1 0.55 +0.4
3,539,850 + Xcc-8004.3659.1 0.59 +0.1
3,539,850 + Xcc-8004.3659.1 0.59 -0.2
3,539,850 + Xcc-8004.3659.1 0.59 -1.2
3,539,850 + Xcc-8004.3659.1 0.59 -0.2
3,539,851 - Xcc-8004.3659.1 0.59 -0.9
3,539,851 - Xcc-8004.3659.1 0.59 +0.6
3,539,929 - Xcc-8004.3659.1 0.65 -0.0
3,540,144 + Xcc-8004.3659.1 0.82 -0.0
3,540,144 + Xcc-8004.3659.1 0.82 -0.7
3,540,144 + Xcc-8004.3659.1 0.82 +0.3
3,540,144 + Xcc-8004.3659.1 0.82 +0.6
3,540,144 + Xcc-8004.3659.1 0.82 +0.5
3,540,145 - Xcc-8004.3659.1 0.82 +0.3
3,540,145 - Xcc-8004.3659.1 0.82 -0.8
3,540,145 - Xcc-8004.3659.1 0.82 -2.0
3,540,145 - Xcc-8004.3659.1 0.82 +0.4
3,540,525 + Xcc-8004.3660.1 0.28 +0.3
3,540,525 + Xcc-8004.3660.1 0.28 +0.7
3,540,525 + Xcc-8004.3660.1 0.28 +0.6
3,540,525 + Xcc-8004.3660.1 0.28 -0.2
3,540,526 - Xcc-8004.3660.1 0.29 +0.5
3,540,526 - Xcc-8004.3660.1 0.29 +0.4
3,540,526 - Xcc-8004.3660.1 0.29 -0.8
3,540,526 - Xcc-8004.3660.1 0.29 +0.1
3,540,526 - Xcc-8004.3660.1 0.29 +0.4
3,540,710 + -1.0
3,540,710 + +0.0
3,540,710 + -0.1
3,540,711 - -0.1
3,540,734 - +0.3
3,540,744 + +1.2
3,540,744 + +0.0
3,540,744 + -0.3
3,540,744 + -2.2
3,540,745 - -0.8
3,540,745 - +0.4
3,540,745 - -0.1
3,540,745 - +0.2
3,540,899 + Xcc-8004.3661.1 0.18 -1.7
3,540,900 - Xcc-8004.3661.1 0.19 -1.1
3,541,028 + Xcc-8004.3661.1 0.36 -2.7
3,541,029 - Xcc-8004.3661.1 0.36 -2.1
3,541,029 - Xcc-8004.3661.1 0.36 -2.3
3,541,029 - Xcc-8004.3661.1 0.36 -1.7
3,541,029 - Xcc-8004.3661.1 0.36 -1.6
3,541,103 + Xcc-8004.3661.1 0.46 -3.7
3,541,104 - Xcc-8004.3661.1 0.46 +0.6
3,541,178 + Xcc-8004.3661.1 0.56 -1.4
3,541,179 - Xcc-8004.3661.1 0.56 -1.3
3,541,179 - Xcc-8004.3661.1 0.56 -0.3
3,541,179 - Xcc-8004.3661.1 0.56 -2.4
3,541,304 + Xcc-8004.3661.1 0.72 -2.1
3,541,304 + Xcc-8004.3661.1 0.72 -0.9
3,541,305 - Xcc-8004.3661.1 0.72 -1.7
3,541,305 - Xcc-8004.3661.1 0.72 +0.0

Or see this region's nucleotide sequence