Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2933.1

Experiment: D-Glucose 16.67 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose 16.67 mM (C)
2,855,547	+		Xcc-8004.2931.1	0.74	-1.4
2,855,581	+		Xcc-8004.2931.1	0.76	-2.9
2,855,581	+		Xcc-8004.2931.1	0.76	-3.9
2,855,581	+		Xcc-8004.2931.1	0.76	-3.4
2,855,582	-		Xcc-8004.2931.1	0.76	-1.2
2,855,773	+				-3.1
2,855,773	+				-2.2
2,855,774	-				-3.5
2,855,774	-				-2.0
2,855,774	-				-1.0
2,855,774	-				-2.1
2,855,869	+				-2.8
2,855,869	+				-3.0
2,855,870	-				-2.1
2,855,870	-				-3.4
2,855,870	-				-2.0
2,855,882	+				-1.0
2,855,882	+				+1.3
2,855,979	+				+0.9
2,855,979	+				+0.7
2,855,979	+				+0.2
2,855,982	-				+0.5
2,855,982	-				+0.8
2,855,982	-				-1.6
2,856,034	+				-2.2
2,856,034	+				-1.9
2,856,034	+				+0.8
2,856,035	-				-2.2
2,856,035	-				+0.4
2,856,035	-				+0.0
2,856,035	-				+0.2
2,856,035	-				-0.4
2,856,035	-				+0.4
2,856,112	+		Xcc-8004.2932.1	0.14	-0.6
2,856,112	+		Xcc-8004.2932.1	0.14	+0.4
2,856,112	+		Xcc-8004.2932.1	0.14	-0.7
2,856,113	-		Xcc-8004.2932.1	0.15	-0.5
2,856,130	+		Xcc-8004.2932.1	0.21	+0.1
2,856,130	+		Xcc-8004.2932.1	0.21	+0.1
2,856,131	-		Xcc-8004.2932.1	0.21	-1.4
2,856,131	-		Xcc-8004.2932.1	0.21	+1.4
2,856,131	-		Xcc-8004.2932.1	0.21	+0.7
2,856,131	-		Xcc-8004.2932.1	0.21	-0.5
2,856,166	+		Xcc-8004.2932.1	0.34	-0.2
2,856,166	+		Xcc-8004.2932.1	0.34	-0.4
2,856,166	+		Xcc-8004.2932.1	0.34	+0.7
2,856,166	+		Xcc-8004.2932.1	0.34	+0.1
2,856,166	+		Xcc-8004.2932.1	0.34	+0.3
2,856,166	+		Xcc-8004.2932.1	0.34	+1.0
2,856,166	+		Xcc-8004.2932.1	0.34	-0.7
2,856,166	+		Xcc-8004.2932.1	0.34	-0.3
2,856,167	-		Xcc-8004.2932.1	0.34	-0.7
2,856,167	-		Xcc-8004.2932.1	0.34	+0.3
2,856,167	-		Xcc-8004.2932.1	0.34	+0.1
2,856,167	-		Xcc-8004.2932.1	0.34	-0.4
2,856,167	-		Xcc-8004.2932.1	0.34	-0.3
2,856,167	-		Xcc-8004.2932.1	0.34	-0.2
2,856,167	-		Xcc-8004.2932.1	0.34	+0.8
2,856,263	+		Xcc-8004.2932.1	0.69	-0.1
2,856,263	+		Xcc-8004.2932.1	0.69	-2.0
2,856,263	+		Xcc-8004.2932.1	0.69	+0.8
2,856,264	-		Xcc-8004.2932.1	0.70	+0.2
2,856,319	+		Xcc-8004.2932.1	0.89	+0.6
2,856,319	+		Xcc-8004.2932.1	0.89	-1.1
2,856,319	+		Xcc-8004.2932.1	0.89	-0.3
2,856,320	-				-1.4
2,856,320	-				-0.3
2,856,320	-				-0.6
2,856,332	+				+0.6
2,856,332	+				+0.0
2,856,333	-				-1.6
2,856,333	-				-0.6
2,856,556	+		Xcc-8004.2933.1	0.17	-0.4
2,856,556	+		Xcc-8004.2933.1	0.17	+0.7
2,856,557	-		Xcc-8004.2933.1	0.18	-0.6
2,856,557	-		Xcc-8004.2933.1	0.18	-0.1
2,856,614	+		Xcc-8004.2933.1	0.28	-0.6
2,856,626	+		Xcc-8004.2933.1	0.30	-0.1
2,856,626	+		Xcc-8004.2933.1	0.30	-1.9
2,856,627	-		Xcc-8004.2933.1	0.30	-0.8
2,856,627	-		Xcc-8004.2933.1	0.30	-2.3
2,856,627	-		Xcc-8004.2933.1	0.30	-1.3
2,856,974	+				-0.8
2,856,975	-				-1.3
2,857,013	+				+0.8
2,857,013	+				-1.1
2,857,013	+				+0.9
2,857,013	+				-1.1
2,857,013	+				-0.3
2,857,013	+				-0.1
2,857,013	+				-1.0
2,857,013	+				-1.1
2,857,013	+				+0.6
2,857,013	+				+0.6
2,857,013	+				-0.7
2,857,013	+				-0.7
2,857,013	+				-1.2
2,857,013	+				-0.5
2,857,014	-				+0.5
2,857,014	-				+1.1
2,857,014	-				+0.6
2,857,014	-				+0.3
2,857,014	-				+0.6
2,857,014	-				-1.5
2,857,014	-				+0.5
2,857,014	-				+0.3
2,857,014	-				-0.4
2,857,014	-				+1.6
2,857,014	-				-0.2
2,857,014	-				+0.4
2,857,014	-				+0.3
2,857,014	-				-0.5
2,857,014	-				-1.6
2,857,014	-				-0.1
2,857,014	-				-0.9
2,857,086	+				-0.2
2,857,086	+				-0.2
2,857,086	+				-0.6
2,857,087	-				+1.5
2,857,100	+				-0.5
2,857,101	-				+0.9
2,857,101	-				+0.3
2,857,101	-				+0.3
2,857,172	+				-1.4
2,857,172	+				-0.2
2,857,172	+				-0.5
2,857,172	+				+0.0
2,857,172	+				+0.6
2,857,172	+				+1.5
2,857,172	+				-0.1
2,857,172	+				-2.5
2,857,172	+				+0.0
2,857,172	+				-0.7
2,857,173	-				-0.5
2,857,173	-				+1.3
2,857,173	-				-0.1
2,857,173	-				+0.1
2,857,173	-				+0.5
2,857,173	-				+0.7
2,857,173	-				+0.8
2,857,173	-				-1.0
2,857,173	-				+1.3
2,857,179	+				-0.0
2,857,179	+				+0.6
2,857,179	+				+0.2
2,857,180	-				+0.4
2,857,180	-				-0.3
2,857,180	-				+0.5
2,857,180	-				+0.7
2,857,449	+		Xcc-8004.2935.1	0.18	+1.9
2,857,450	-		Xcc-8004.2935.1	0.18	+1.0
2,857,491	+		Xcc-8004.2935.1	0.21	+0.7
2,857,492	-		Xcc-8004.2935.1	0.21	+0.5
2,857,492	-		Xcc-8004.2935.1	0.21	+0.7
2,857,492	-		Xcc-8004.2935.1	0.21	+0.4
2,857,492	-		Xcc-8004.2935.1	0.21	+1.6
2,857,492	-		Xcc-8004.2935.1	0.21	+1.1
2,857,497	+		Xcc-8004.2935.1	0.22	+1.1
2,857,497	+		Xcc-8004.2935.1	0.22	+1.3
2,857,498	-		Xcc-8004.2935.1	0.22	-0.3
2,857,503	+		Xcc-8004.2935.1	0.22	+0.8
2,857,504	-		Xcc-8004.2935.1	0.22	-2.3
2,857,504	-		Xcc-8004.2935.1	0.22	-0.9
2,857,560	+		Xcc-8004.2935.1	0.26	-0.2
2,857,560	+		Xcc-8004.2935.1	0.26	+0.3
2,857,561	-		Xcc-8004.2935.1	0.26	+1.4
2,857,561	-		Xcc-8004.2935.1	0.26	+1.5
2,857,561	-		Xcc-8004.2935.1	0.26	+0.6
2,857,561	-		Xcc-8004.2935.1	0.26	+0.4
2,857,602	+		Xcc-8004.2935.1	0.29	+0.5
2,857,603	-		Xcc-8004.2935.1	0.29	+1.6
2,857,603	-		Xcc-8004.2935.1	0.29	+0.8
2,857,603	-		Xcc-8004.2935.1	0.29	+0.1
2,857,603	-		Xcc-8004.2935.1	0.29	+0.4
2,857,758	+		Xcc-8004.2935.1	0.39	+1.1
2,857,758	+		Xcc-8004.2935.1	0.39	+0.3
2,857,758	+		Xcc-8004.2935.1	0.39	+0.5
2,857,759	-		Xcc-8004.2935.1	0.39	+1.7
2,857,759	-		Xcc-8004.2935.1	0.39	+1.1
2,857,759	-		Xcc-8004.2935.1	0.39	+0.5
2,857,851	+		Xcc-8004.2935.1	0.46	+0.6
2,857,851	+		Xcc-8004.2935.1	0.46	+1.4
2,857,851	+		Xcc-8004.2935.1	0.46	+0.0
2,857,851	+		Xcc-8004.2935.1	0.46	+0.5
2,857,851	+		Xcc-8004.2935.1	0.46	+0.9
2,857,851	+		Xcc-8004.2935.1	0.46	+0.5
2,857,851	+		Xcc-8004.2935.1	0.46	-0.5
2,857,851	+		Xcc-8004.2935.1	0.46	-0.2
2,857,851	+		Xcc-8004.2935.1	0.46	-0.4
2,857,851	+		Xcc-8004.2935.1	0.46	-0.2
2,857,852	-		Xcc-8004.2935.1	0.46	+1.7
2,857,852	-		Xcc-8004.2935.1	0.46	+0.8
2,857,852	-		Xcc-8004.2935.1	0.46	+1.6
2,857,852	-		Xcc-8004.2935.1	0.46	+0.8
2,857,852	-		Xcc-8004.2935.1	0.46	+1.1
2,857,852	-		Xcc-8004.2935.1	0.46	+1.3
2,857,853	+		Xcc-8004.2935.1	0.46	+0.6
2,857,853	+		Xcc-8004.2935.1	0.46	-1.2
2,857,853	+		Xcc-8004.2935.1	0.46	+1.6
2,857,853	+		Xcc-8004.2935.1	0.46	+0.6
2,857,854	-		Xcc-8004.2935.1	0.46	+0.4
2,857,892	+		Xcc-8004.2935.1	0.48	-0.8
2,857,906	+		Xcc-8004.2935.1	0.49	+0.4
2,857,907	-		Xcc-8004.2935.1	0.49	+1.0
2,857,907	-		Xcc-8004.2935.1	0.49	+0.4
2,857,907	-		Xcc-8004.2935.1	0.49	-1.5
2,857,924	+		Xcc-8004.2935.1	0.50	+0.9
2,857,925	-		Xcc-8004.2935.1	0.51	+0.7
2,857,956	+		Xcc-8004.2935.1	0.53	+0.5
2,857,956	+		Xcc-8004.2935.1	0.53	+0.1
2,857,956	+		Xcc-8004.2935.1	0.53	+1.5
2,857,956	+		Xcc-8004.2935.1	0.53	+1.9
2,857,956	+		Xcc-8004.2935.1	0.53	-0.0
2,857,957	-		Xcc-8004.2935.1	0.53	+1.1
2,857,957	-		Xcc-8004.2935.1	0.53	+2.6