Experiment: D-Glucose 16.67 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1967.1 and Xcc-8004.1968.1 are separated by 201 nucleotides Xcc-8004.1968.1 and Xcc-8004.1969.1 overlap by 4 nucleotides
Xcc-8004.1967.1: Xcc-8004.1967.1 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 1,895,655 to 1,896,473
Xcc-8004.1967.1
Xcc-8004.1968.1: Xcc-8004.1968.1 - Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2), at 1,896,675 to 1,897,562
Xcc-8004.1968.1
Xcc-8004.1969.1: Xcc-8004.1969.1 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,897,559 to 1,898,908
Xcc-8004.1969.1
Position (kb) 1896
1897
1898 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1895.675 kb on + strand at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.904 kb on + strand, within Xcc-8004.1967.1 at 1895.905 kb on - strand, within Xcc-8004.1967.1 at 1895.905 kb on - strand, within Xcc-8004.1967.1 at 1895.905 kb on - strand, within Xcc-8004.1967.1 at 1895.905 kb on - strand, within Xcc-8004.1967.1 at 1895.959 kb on + strand, within Xcc-8004.1967.1 at 1895.959 kb on + strand, within Xcc-8004.1967.1 at 1895.960 kb on - strand, within Xcc-8004.1967.1 at 1895.960 kb on - strand, within Xcc-8004.1967.1 at 1895.960 kb on - strand, within Xcc-8004.1967.1 at 1895.970 kb on + strand, within Xcc-8004.1967.1 at 1896.183 kb on + strand, within Xcc-8004.1967.1 at 1896.183 kb on + strand, within Xcc-8004.1967.1 at 1896.183 kb on + strand, within Xcc-8004.1967.1 at 1896.183 kb on + strand, within Xcc-8004.1967.1 at 1896.183 kb on + strand, within Xcc-8004.1967.1 at 1896.184 kb on - strand, within Xcc-8004.1967.1 at 1896.184 kb on - strand, within Xcc-8004.1967.1 at 1896.184 kb on - strand, within Xcc-8004.1967.1 at 1896.184 kb on - strand, within Xcc-8004.1967.1 at 1896.184 kb on - strand, within Xcc-8004.1967.1 at 1896.189 kb on + strand, within Xcc-8004.1967.1 at 1896.189 kb on + strand, within Xcc-8004.1967.1 at 1896.189 kb on + strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.190 kb on - strand, within Xcc-8004.1967.1 at 1896.192 kb on + strand, within Xcc-8004.1967.1 at 1896.192 kb on + strand, within Xcc-8004.1967.1 at 1896.192 kb on + strand, within Xcc-8004.1967.1 at 1896.193 kb on - strand, within Xcc-8004.1967.1 at 1896.193 kb on - strand, within Xcc-8004.1967.1 at 1896.419 kb on + strand at 1896.618 kb on + strand at 1896.618 kb on + strand at 1896.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C) remove 1,895,675 + -1.4 1,895,904 + Xcc-8004.1967.1 0.30 -3.0 1,895,904 + Xcc-8004.1967.1 0.30 -2.0 1,895,904 + Xcc-8004.1967.1 0.30 -1.9 1,895,904 + Xcc-8004.1967.1 0.30 -2.4 1,895,904 + Xcc-8004.1967.1 0.30 -2.7 1,895,904 + Xcc-8004.1967.1 0.30 -2.9 1,895,905 - Xcc-8004.1967.1 0.31 -2.1 1,895,905 - Xcc-8004.1967.1 0.31 -2.0 1,895,905 - Xcc-8004.1967.1 0.31 -2.5 1,895,905 - Xcc-8004.1967.1 0.31 -1.0 1,895,959 + Xcc-8004.1967.1 0.37 -3.8 1,895,959 + Xcc-8004.1967.1 0.37 -2.7 1,895,960 - Xcc-8004.1967.1 0.37 -2.3 1,895,960 - Xcc-8004.1967.1 0.37 -2.6 1,895,960 - Xcc-8004.1967.1 0.37 -4.0 1,895,970 + Xcc-8004.1967.1 0.38 -1.0 1,896,183 + Xcc-8004.1967.1 0.64 -0.4 1,896,183 + Xcc-8004.1967.1 0.64 -1.2 1,896,183 + Xcc-8004.1967.1 0.64 -2.8 1,896,183 + Xcc-8004.1967.1 0.64 -2.3 1,896,183 + Xcc-8004.1967.1 0.64 -1.6 1,896,184 - Xcc-8004.1967.1 0.65 -2.7 1,896,184 - Xcc-8004.1967.1 0.65 -2.9 1,896,184 - Xcc-8004.1967.1 0.65 -2.9 1,896,184 - Xcc-8004.1967.1 0.65 -3.6 1,896,184 - Xcc-8004.1967.1 0.65 -2.3 1,896,189 + Xcc-8004.1967.1 0.65 -5.4 1,896,189 + Xcc-8004.1967.1 0.65 -3.7 1,896,189 + Xcc-8004.1967.1 0.65 -2.6 1,896,190 - Xcc-8004.1967.1 0.65 -2.3 1,896,190 - Xcc-8004.1967.1 0.65 -2.0 1,896,190 - Xcc-8004.1967.1 0.65 -1.4 1,896,190 - Xcc-8004.1967.1 0.65 -3.1 1,896,190 - Xcc-8004.1967.1 0.65 -2.0 1,896,190 - Xcc-8004.1967.1 0.65 -3.5 1,896,190 - Xcc-8004.1967.1 0.65 -1.5 1,896,190 - Xcc-8004.1967.1 0.65 -2.8 1,896,192 + Xcc-8004.1967.1 0.66 -1.6 1,896,192 + Xcc-8004.1967.1 0.66 -2.9 1,896,192 + Xcc-8004.1967.1 0.66 -3.5 1,896,193 - Xcc-8004.1967.1 0.66 -2.7 1,896,193 - Xcc-8004.1967.1 0.66 -2.7 1,896,419 + -2.1 1,896,618 + -0.5 1,896,618 + -0.8 1,896,619 - +0.0
Or see this region's nucleotide sequence