Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1713.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1710.1 and Xcc-8004.1711.1 overlap by 32 nucleotidesXcc-8004.1711.1 and Xcc-8004.1713.1 are separated by 287 nucleotidesXcc-8004.1713.1 and Xcc-8004.1714.1 are separated by 122 nucleotides Xcc-8004.1710.1: Xcc-8004.1710.1 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 1,640,591 to 1,641,523 Xcc-8004.1710.1 Xcc-8004.1711.1: Xcc-8004.1711.1 - Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC, at 1,641,492 to 1,642,175 Xcc-8004.1711.1 Xcc-8004.1713.1: Xcc-8004.1713.1 - Twitching motility protein PilT, at 1,642,463 to 1,643,500 Xcc-8004.1713.1 Xcc-8004.1714.1: Xcc-8004.1714.1 - Twitching motility protein PilT, at 1,643,623 to 1,644,753 Xcc-8004.1714.1 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -3 -2 -1 0 1at 1641.525 kb on + strandat 1641.526 kb on - strandat 1641.526 kb on - strandat 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.605 kb on + strand, within Xcc-8004.1711.1at 1641.606 kb on - strand, within Xcc-8004.1711.1at 1641.606 kb on - strand, within Xcc-8004.1711.1at 1641.606 kb on - strand, within Xcc-8004.1711.1at 1641.606 kb on - strand, within Xcc-8004.1711.1at 1641.810 kb on - strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.018 kb on + strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.019 kb on - strand, within Xcc-8004.1711.1at 1642.191 kb on + strandat 1642.206 kb on + strandat 1642.207 kb on - strandat 1642.207 kb on - strandat 1642.291 kb on - strandat 1642.291 kb on - strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.409 kb on + strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.410 kb on - strandat 1642.411 kb on + strandat 1642.411 kb on + strandat 1642.411 kb on + strandat 1642.411 kb on + strandat 1642.412 kb on - strandat 1642.412 kb on - strandat 1642.412 kb on - strandat 1642.412 kb on - strandat 1642.412 kb on - strandat 1642.412 kb on - strandat 1642.428 kb on + strandat 1642.429 kb on - strandat 1642.479 kb on + strandat 1642.479 kb on + strandat 1642.479 kb on + strandat 1642.576 kb on + strand, within Xcc-8004.1713.1at 1642.576 kb on + strand, within Xcc-8004.1713.1at 1642.576 kb on + strand, within Xcc-8004.1713.1at 1642.594 kb on + strand, within Xcc-8004.1713.1at 1642.594 kb on + strand, within Xcc-8004.1713.1at 1642.594 kb on + strand, within Xcc-8004.1713.1at 1642.594 kb on + strand, within Xcc-8004.1713.1at 1642.595 kb on - strand, within Xcc-8004.1713.1at 1642.595 kb on - strand, within Xcc-8004.1713.1at 1642.617 kb on - strand, within Xcc-8004.1713.1at 1642.753 kb on + strand, within Xcc-8004.1713.1at 1642.753 kb on + strand, within Xcc-8004.1713.1at 1642.754 kb on - strand, within Xcc-8004.1713.1at 1642.898 kb on + strand, within Xcc-8004.1713.1at 1642.899 kb on - strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.366 kb on + strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.367 kb on - strand, within Xcc-8004.1713.1at 1643.393 kb on + strand, within Xcc-8004.1713.1at 1643.890 kb on + strand, within Xcc-8004.1714.1at 1643.891 kb on - strand, within Xcc-8004.1714.1at 1643.891 kb on - strand, within Xcc-8004.1714.1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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1,641,525 + -1.3
1,641,526 - +1.0
1,641,526 - +1.0
1,641,605 + Xcc-8004.1711.1 0.17 +0.6
1,641,605 + Xcc-8004.1711.1 0.17 +0.5
1,641,605 + Xcc-8004.1711.1 0.17 -0.2
1,641,605 + Xcc-8004.1711.1 0.17 -1.6
1,641,605 + Xcc-8004.1711.1 0.17 -1.0
1,641,605 + Xcc-8004.1711.1 0.17 -1.5
1,641,606 - Xcc-8004.1711.1 0.17 -0.8
1,641,606 - Xcc-8004.1711.1 0.17 -0.6
1,641,606 - Xcc-8004.1711.1 0.17 -1.6
1,641,606 - Xcc-8004.1711.1 0.17 +0.0
1,641,810 - Xcc-8004.1711.1 0.46 +0.9
1,642,018 + Xcc-8004.1711.1 0.77 -0.7
1,642,018 + Xcc-8004.1711.1 0.77 -0.5
1,642,018 + Xcc-8004.1711.1 0.77 -1.2
1,642,018 + Xcc-8004.1711.1 0.77 +0.6
1,642,018 + Xcc-8004.1711.1 0.77 -2.0
1,642,018 + Xcc-8004.1711.1 0.77 -0.4
1,642,018 + Xcc-8004.1711.1 0.77 -1.5
1,642,018 + Xcc-8004.1711.1 0.77 -0.9
1,642,018 + Xcc-8004.1711.1 0.77 -0.6
1,642,019 - Xcc-8004.1711.1 0.77 -0.5
1,642,019 - Xcc-8004.1711.1 0.77 -3.3
1,642,019 - Xcc-8004.1711.1 0.77 -1.9
1,642,019 - Xcc-8004.1711.1 0.77 -0.7
1,642,019 - Xcc-8004.1711.1 0.77 -0.8
1,642,019 - Xcc-8004.1711.1 0.77 -1.0
1,642,019 - Xcc-8004.1711.1 0.77 -0.7
1,642,019 - Xcc-8004.1711.1 0.77 -1.3
1,642,019 - Xcc-8004.1711.1 0.77 -0.4
1,642,019 - Xcc-8004.1711.1 0.77 -1.4
1,642,019 - Xcc-8004.1711.1 0.77 +0.8
1,642,191 + -0.7
1,642,206 + -1.0
1,642,207 - -0.1
1,642,207 - -0.9
1,642,291 - -0.3
1,642,291 - +0.3
1,642,409 + -1.5
1,642,409 + -0.3
1,642,409 + +0.9
1,642,409 + +0.1
1,642,409 + -2.1
1,642,409 + -0.1
1,642,409 + +0.2
1,642,409 + +0.4
1,642,409 + -1.2
1,642,409 + +1.0
1,642,409 + +0.0
1,642,410 - +0.1
1,642,410 - +0.4
1,642,410 - -1.2
1,642,410 - -0.4
1,642,410 - +0.6
1,642,410 - -2.3
1,642,410 - -0.6
1,642,410 - -0.3
1,642,410 - -1.1
1,642,411 + -0.0
1,642,411 + -0.4
1,642,411 + -0.8
1,642,411 + -1.1
1,642,412 - +0.9
1,642,412 - -0.0
1,642,412 - +0.6
1,642,412 - +1.0
1,642,412 - -1.6
1,642,412 - +0.0
1,642,428 + -0.1
1,642,429 - +1.6
1,642,479 + -0.5
1,642,479 + -0.3
1,642,479 + -0.1
1,642,576 + Xcc-8004.1713.1 0.11 -0.4
1,642,576 + Xcc-8004.1713.1 0.11 -0.9
1,642,576 + Xcc-8004.1713.1 0.11 -1.2
1,642,594 + Xcc-8004.1713.1 0.13 +0.5
1,642,594 + Xcc-8004.1713.1 0.13 +0.3
1,642,594 + Xcc-8004.1713.1 0.13 -0.9
1,642,594 + Xcc-8004.1713.1 0.13 -0.8
1,642,595 - Xcc-8004.1713.1 0.13 +0.4
1,642,595 - Xcc-8004.1713.1 0.13 +0.1
1,642,617 - Xcc-8004.1713.1 0.15 -0.6
1,642,753 + Xcc-8004.1713.1 0.28 -0.2
1,642,753 + Xcc-8004.1713.1 0.28 +0.4
1,642,754 - Xcc-8004.1713.1 0.28 -1.5
1,642,898 + Xcc-8004.1713.1 0.42 +0.3
1,642,899 - Xcc-8004.1713.1 0.42 -0.2
1,643,366 + Xcc-8004.1713.1 0.87 +0.3
1,643,366 + Xcc-8004.1713.1 0.87 -0.3
1,643,366 + Xcc-8004.1713.1 0.87 +0.1
1,643,366 + Xcc-8004.1713.1 0.87 +0.5
1,643,367 - Xcc-8004.1713.1 0.87 -0.6
1,643,367 - Xcc-8004.1713.1 0.87 -0.1
1,643,367 - Xcc-8004.1713.1 0.87 +0.3
1,643,367 - Xcc-8004.1713.1 0.87 +0.3
1,643,367 - Xcc-8004.1713.1 0.87 -0.1
1,643,393 + Xcc-8004.1713.1 0.90 -0.2
1,643,890 + Xcc-8004.1714.1 0.24 +0.9
1,643,891 - Xcc-8004.1714.1 0.24 +0.3
1,643,891 - Xcc-8004.1714.1 0.24 -0.2

Or see this region's nucleotide sequence