Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1518.1

Experiment: D-Glucose 16.67 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1516.1 and Xcc-8004.1517.1 overlap by 8 nucleotidesXcc-8004.1517.1 and Xcc-8004.1518.1 overlap by 4 nucleotidesXcc-8004.1518.1 and Xcc-8004.1519.1 are separated by 386 nucleotides Xcc-8004.1516.1: Xcc-8004.1516.1 - cytochrome P450 hydroxylase, at 1,454,379 to 1,455,539 Xcc-8004.1516.1 Xcc-8004.1517.1: Xcc-8004.1517.1 - Sulfotransferase, at 1,455,532 to 1,456,446 Xcc-8004.1517.1 Xcc-8004.1518.1: Xcc-8004.1518.1 - FIG01212366: hypothetical protein, at 1,456,443 to 1,457,144 Xcc-8004.1518.1 Xcc-8004.1519.1: Xcc-8004.1519.1 - FIG01210820: hypothetical protein, at 1,457,531 to 1,458,598 Xcc-8004.1519.1 Position (kb) 1456 1457 1458Strain fitness (log2 ratio) -1 0 1at 1455.469 kb on + strandat 1455.538 kb on - strandat 1455.596 kb on + strandat 1455.627 kb on + strand, within Xcc-8004.1517.1at 1455.633 kb on - strand, within Xcc-8004.1517.1at 1455.843 kb on + strand, within Xcc-8004.1517.1at 1455.865 kb on + strand, within Xcc-8004.1517.1at 1455.866 kb on - strand, within Xcc-8004.1517.1at 1455.954 kb on + strand, within Xcc-8004.1517.1at 1455.954 kb on + strand, within Xcc-8004.1517.1at 1455.955 kb on - strand, within Xcc-8004.1517.1at 1456.016 kb on - strand, within Xcc-8004.1517.1at 1456.116 kb on - strand, within Xcc-8004.1517.1at 1456.124 kb on - strand, within Xcc-8004.1517.1at 1456.124 kb on - strand, within Xcc-8004.1517.1at 1456.137 kb on - strand, within Xcc-8004.1517.1at 1456.186 kb on - strand, within Xcc-8004.1517.1at 1456.240 kb on - strand, within Xcc-8004.1517.1at 1456.240 kb on - strand, within Xcc-8004.1517.1at 1456.261 kb on + strand, within Xcc-8004.1517.1at 1456.261 kb on + strand, within Xcc-8004.1517.1at 1456.358 kb on + strandat 1456.362 kb on + strandat 1456.363 kb on - strandat 1456.369 kb on + strandat 1456.632 kb on + strand, within Xcc-8004.1518.1at 1456.876 kb on - strand, within Xcc-8004.1518.1at 1456.910 kb on + strand, within Xcc-8004.1518.1at 1456.910 kb on + strand, within Xcc-8004.1518.1at 1456.910 kb on + strand, within Xcc-8004.1518.1at 1456.911 kb on - strand, within Xcc-8004.1518.1at 1456.911 kb on - strand, within Xcc-8004.1518.1at 1456.913 kb on - strand, within Xcc-8004.1518.1at 1457.022 kb on - strand, within Xcc-8004.1518.1at 1457.094 kb on + strandat 1457.095 kb on - strandat 1457.095 kb on - strandat 1457.153 kb on + strandat 1457.154 kb on - strandat 1457.154 kb on - strandat 1457.154 kb on - strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.157 kb on + strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.158 kb on - strandat 1457.159 kb on + strandat 1457.159 kb on + strandat 1457.160 kb on - strandat 1457.160 kb on - strandat 1457.160 kb on - strandat 1457.242 kb on + strandat 1457.312 kb on + strandat 1457.313 kb on - strandat 1457.313 kb on - strandat 1457.313 kb on - strandat 1457.413 kb on + strandat 1457.413 kb on + strandat 1457.414 kb on - strandat 1457.414 kb on - strandat 1457.414 kb on - strandat 1457.459 kb on + strandat 1457.460 kb on - strandat 1457.490 kb on + strandat 1457.595 kb on + strandat 1457.595 kb on + strandat 1457.595 kb on + strandat 1457.595 kb on + strandat 1457.595 kb on + strandat 1457.596 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
remove
1,455,469 + -0.8
1,455,538 - +0.3
1,455,596 + +0.7
1,455,627 + Xcc-8004.1517.1 0.10 -0.5
1,455,633 - Xcc-8004.1517.1 0.11 -0.1
1,455,843 + Xcc-8004.1517.1 0.34 -1.2
1,455,865 + Xcc-8004.1517.1 0.36 +0.0
1,455,866 - Xcc-8004.1517.1 0.37 -0.8
1,455,954 + Xcc-8004.1517.1 0.46 -0.1
1,455,954 + Xcc-8004.1517.1 0.46 +0.6
1,455,955 - Xcc-8004.1517.1 0.46 +0.5
1,456,016 - Xcc-8004.1517.1 0.53 -0.3
1,456,116 - Xcc-8004.1517.1 0.64 +0.4
1,456,124 - Xcc-8004.1517.1 0.65 -0.3
1,456,124 - Xcc-8004.1517.1 0.65 +0.2
1,456,137 - Xcc-8004.1517.1 0.66 -0.3
1,456,186 - Xcc-8004.1517.1 0.71 +0.5
1,456,240 - Xcc-8004.1517.1 0.77 +0.1
1,456,240 - Xcc-8004.1517.1 0.77 +0.2
1,456,261 + Xcc-8004.1517.1 0.80 +0.4
1,456,261 + Xcc-8004.1517.1 0.80 +0.8
1,456,358 + -1.3
1,456,362 + -1.7
1,456,363 - -1.1
1,456,369 + -0.0
1,456,632 + Xcc-8004.1518.1 0.27 -0.8
1,456,876 - Xcc-8004.1518.1 0.62 +0.2
1,456,910 + Xcc-8004.1518.1 0.67 +0.8
1,456,910 + Xcc-8004.1518.1 0.67 +0.4
1,456,910 + Xcc-8004.1518.1 0.67 -0.3
1,456,911 - Xcc-8004.1518.1 0.67 -0.1
1,456,911 - Xcc-8004.1518.1 0.67 +0.2
1,456,913 - Xcc-8004.1518.1 0.67 +0.1
1,457,022 - Xcc-8004.1518.1 0.82 +0.4
1,457,094 + +0.7
1,457,095 - +0.9
1,457,095 - +0.7
1,457,153 + +0.9
1,457,154 - +1.2
1,457,154 - -0.8
1,457,154 - -0.5
1,457,157 + -0.8
1,457,157 + -0.5
1,457,157 + -1.3
1,457,157 + +0.6
1,457,157 + -0.7
1,457,157 + +0.3
1,457,157 + -0.1
1,457,158 - -0.3
1,457,158 - -0.2
1,457,158 - -0.1
1,457,158 - +0.6
1,457,158 - +0.2
1,457,158 - -0.2
1,457,158 - -1.4
1,457,159 + -0.5
1,457,159 + -0.3
1,457,160 - +0.8
1,457,160 - -0.7
1,457,160 - -0.7
1,457,242 + +0.7
1,457,312 + +0.5
1,457,313 - +0.0
1,457,313 - +0.9
1,457,313 - +0.3
1,457,413 + -0.2
1,457,413 + +0.9
1,457,414 - -0.3
1,457,414 - +0.8
1,457,414 - -0.2
1,457,459 + +0.3
1,457,460 - +1.0
1,457,490 + +0.7
1,457,595 + -0.1
1,457,595 + +0.6
1,457,595 + -0.9
1,457,595 + +0.1
1,457,595 + -0.2
1,457,596 - -0.7

Or see this region's nucleotide sequence