Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1443.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1441.1 and Xcc-8004.1442.1 are separated by 91 nucleotidesXcc-8004.1442.1 and Xcc-8004.1443.1 overlap by 11 nucleotidesXcc-8004.1443.1 and Xcc-8004.1445.1 are separated by 264 nucleotides Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471 Xcc-8004.1441.1 Xcc-8004.1442.1: Xcc-8004.1442.1 - Tol biopolymer transport system, TolR protein, at 1,381,563 to 1,382,012 Xcc-8004.1442.1 Xcc-8004.1443.1: Xcc-8004.1443.1 - TolA protein, at 1,382,002 to 1,383,039 Xcc-8004.1443.1 Xcc-8004.1445.1: Xcc-8004.1445.1 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 1,383,304 to 1,384,623 Xcc-8004.1445.1 Position (kb) 1382 1383 1384Strain fitness (log2 ratio) -1 0 1 2at 1381.469 kb on + strandat 1381.469 kb on + strandat 1381.469 kb on + strandat 1381.470 kb on - strandat 1381.548 kb on + strandat 1381.548 kb on + strandat 1383.079 kb on + strandat 1383.079 kb on + strandat 1383.245 kb on + strandat 1383.245 kb on + strandat 1383.245 kb on + strandat 1383.246 kb on - strandat 1383.246 kb on - strandat 1383.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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1,381,469 + -0.5
1,381,469 + -0.3
1,381,469 + +1.6
1,381,470 - +0.6
1,381,548 + -0.5
1,381,548 + -0.4
1,383,079 + +0.5
1,383,079 + +0.9
1,383,245 + -1.2
1,383,245 + +1.8
1,383,245 + +0.4
1,383,246 - +0.4
1,383,246 - -0.7
1,383,265 + -1.2

Or see this region's nucleotide sequence