Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1371.1

Experiment: D-Glucose 16.67 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1369.1 and Xcc-8004.1371.1 are separated by 26 nucleotidesXcc-8004.1371.1 and Xcc-8004.1372.1 are separated by 49 nucleotides Xcc-8004.1369.1: Xcc-8004.1369.1 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 1,296,518 to 1,297,855 Xcc-8004.1369.1 Xcc-8004.1371.1: Xcc-8004.1371.1 - Glucoamylase (EC 3.2.1.3), at 1,297,882 to 1,299,660 Xcc-8004.1371.1 Xcc-8004.1372.1: Xcc-8004.1372.1 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 1,299,710 to 1,300,468 Xcc-8004.1372.1 Position (kb) 1297 1298 1299 1300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.005 kb on + strand, within Xcc-8004.1369.1at 1297.006 kb on - strand, within Xcc-8004.1369.1at 1297.006 kb on - strand, within Xcc-8004.1369.1at 1297.006 kb on - strand, within Xcc-8004.1369.1at 1297.086 kb on + strand, within Xcc-8004.1369.1at 1297.086 kb on + strand, within Xcc-8004.1369.1at 1297.086 kb on + strand, within Xcc-8004.1369.1at 1297.299 kb on + strand, within Xcc-8004.1369.1at 1297.299 kb on + strand, within Xcc-8004.1369.1at 1297.299 kb on + strand, within Xcc-8004.1369.1at 1297.299 kb on + strand, within Xcc-8004.1369.1at 1297.299 kb on + strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.300 kb on - strand, within Xcc-8004.1369.1at 1297.350 kb on + strand, within Xcc-8004.1369.1at 1297.494 kb on + strand, within Xcc-8004.1369.1at 1297.495 kb on - strand, within Xcc-8004.1369.1at 1297.495 kb on - strand, within Xcc-8004.1369.1at 1297.495 kb on - strand, within Xcc-8004.1369.1at 1297.572 kb on + strand, within Xcc-8004.1369.1at 1297.596 kb on + strand, within Xcc-8004.1369.1at 1297.659 kb on + strand, within Xcc-8004.1369.1at 1297.659 kb on + strand, within Xcc-8004.1369.1at 1297.660 kb on - strand, within Xcc-8004.1369.1at 1297.660 kb on - strand, within Xcc-8004.1369.1at 1297.663 kb on - strand, within Xcc-8004.1369.1at 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.868 kb on + strandat 1297.869 kb on - strandat 1297.946 kb on + strandat 1297.946 kb on + strandat 1297.946 kb on + strandat 1297.947 kb on - strandat 1297.990 kb on + strandat 1297.990 kb on + strandat 1297.990 kb on + strandat 1297.991 kb on - strandat 1297.991 kb on - strandat 1298.019 kb on + strandat 1298.093 kb on + strand, within Xcc-8004.1371.1at 1298.093 kb on + strand, within Xcc-8004.1371.1at 1298.093 kb on + strand, within Xcc-8004.1371.1at 1298.093 kb on + strand, within Xcc-8004.1371.1at 1298.153 kb on + strand, within Xcc-8004.1371.1at 1298.153 kb on + strand, within Xcc-8004.1371.1at 1298.154 kb on - strand, within Xcc-8004.1371.1at 1298.160 kb on - strand, within Xcc-8004.1371.1at 1298.255 kb on - strand, within Xcc-8004.1371.1at 1298.373 kb on - strand, within Xcc-8004.1371.1at 1298.453 kb on + strand, within Xcc-8004.1371.1at 1298.453 kb on + strand, within Xcc-8004.1371.1at 1298.453 kb on + strand, within Xcc-8004.1371.1at 1298.454 kb on - strand, within Xcc-8004.1371.1at 1298.454 kb on - strand, within Xcc-8004.1371.1at 1298.454 kb on - strand, within Xcc-8004.1371.1at 1298.454 kb on - strand, within Xcc-8004.1371.1at 1298.792 kb on + strand, within Xcc-8004.1371.1at 1298.792 kb on + strand, within Xcc-8004.1371.1at 1298.793 kb on - strand, within Xcc-8004.1371.1at 1298.793 kb on - strand, within Xcc-8004.1371.1at 1298.960 kb on + strand, within Xcc-8004.1371.1at 1299.029 kb on + strand, within Xcc-8004.1371.1at 1299.029 kb on + strand, within Xcc-8004.1371.1at 1299.030 kb on - strand, within Xcc-8004.1371.1at 1299.051 kb on - strand, within Xcc-8004.1371.1at 1299.051 kb on - strand, within Xcc-8004.1371.1at 1299.079 kb on + strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.080 kb on - strand, within Xcc-8004.1371.1at 1299.084 kb on - strand, within Xcc-8004.1371.1at 1299.084 kb on - strand, within Xcc-8004.1371.1at 1299.253 kb on - strand, within Xcc-8004.1371.1at 1299.253 kb on - strand, within Xcc-8004.1371.1at 1299.339 kb on + strand, within Xcc-8004.1371.1at 1299.356 kb on + strand, within Xcc-8004.1371.1at 1299.357 kb on - strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.461 kb on + strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.462 kb on - strand, within Xcc-8004.1371.1at 1299.670 kb on - strandat 1299.981 kb on - strand, within Xcc-8004.1372.1at 1299.981 kb on - strand, within Xcc-8004.1372.1at 1300.028 kb on + strand, within Xcc-8004.1372.1at 1300.029 kb on - strand, within Xcc-8004.1372.1at 1300.029 kb on - strand, within Xcc-8004.1372.1at 1300.135 kb on + strand, within Xcc-8004.1372.1at 1300.136 kb on - strand, within Xcc-8004.1372.1at 1300.136 kb on - strand, within Xcc-8004.1372.1at 1300.337 kb on + strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.338 kb on - strand, within Xcc-8004.1372.1at 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.474 kb on + strandat 1300.475 kb on - strandat 1300.475 kb on - strandat 1300.496 kb on + strandat 1300.496 kb on + strandat 1300.497 kb on - strandat 1300.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 16.67 mM (C)
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1,297,005 + Xcc-8004.1369.1 0.36 +0.1
1,297,005 + Xcc-8004.1369.1 0.36 +0.3
1,297,005 + Xcc-8004.1369.1 0.36 +0.3
1,297,005 + Xcc-8004.1369.1 0.36 +0.9
1,297,005 + Xcc-8004.1369.1 0.36 +0.6
1,297,005 + Xcc-8004.1369.1 0.36 -0.7
1,297,006 - Xcc-8004.1369.1 0.36 +0.3
1,297,006 - Xcc-8004.1369.1 0.36 -0.4
1,297,006 - Xcc-8004.1369.1 0.36 +1.2
1,297,086 + Xcc-8004.1369.1 0.42 +0.0
1,297,086 + Xcc-8004.1369.1 0.42 +0.6
1,297,086 + Xcc-8004.1369.1 0.42 -2.1
1,297,299 + Xcc-8004.1369.1 0.58 -0.8
1,297,299 + Xcc-8004.1369.1 0.58 -0.0
1,297,299 + Xcc-8004.1369.1 0.58 -0.2
1,297,299 + Xcc-8004.1369.1 0.58 -1.7
1,297,299 + Xcc-8004.1369.1 0.58 -0.7
1,297,300 - Xcc-8004.1369.1 0.58 -1.7
1,297,300 - Xcc-8004.1369.1 0.58 -0.4
1,297,300 - Xcc-8004.1369.1 0.58 -0.2
1,297,300 - Xcc-8004.1369.1 0.58 -1.0
1,297,300 - Xcc-8004.1369.1 0.58 +0.6
1,297,300 - Xcc-8004.1369.1 0.58 +0.2
1,297,350 + Xcc-8004.1369.1 0.62 -0.8
1,297,494 + Xcc-8004.1369.1 0.73 +0.1
1,297,495 - Xcc-8004.1369.1 0.73 -0.4
1,297,495 - Xcc-8004.1369.1 0.73 +0.3
1,297,495 - Xcc-8004.1369.1 0.73 +0.4
1,297,572 + Xcc-8004.1369.1 0.79 -0.3
1,297,596 + Xcc-8004.1369.1 0.81 -0.2
1,297,659 + Xcc-8004.1369.1 0.85 +0.8
1,297,659 + Xcc-8004.1369.1 0.85 +0.2
1,297,660 - Xcc-8004.1369.1 0.85 +0.0
1,297,660 - Xcc-8004.1369.1 0.85 +1.1
1,297,663 - Xcc-8004.1369.1 0.86 -0.2
1,297,868 + +0.7
1,297,868 + -0.6
1,297,868 + -0.4
1,297,868 + +0.4
1,297,868 + +0.6
1,297,868 + +0.3
1,297,868 + -0.9
1,297,868 + +1.6
1,297,869 - +0.3
1,297,946 + -0.3
1,297,946 + -0.4
1,297,946 + +0.3
1,297,947 - -1.1
1,297,990 + +0.6
1,297,990 + -0.5
1,297,990 + -0.4
1,297,991 - -0.2
1,297,991 - +0.3
1,298,019 + +1.2
1,298,093 + Xcc-8004.1371.1 0.12 -0.9
1,298,093 + Xcc-8004.1371.1 0.12 -0.9
1,298,093 + Xcc-8004.1371.1 0.12 +1.5
1,298,093 + Xcc-8004.1371.1 0.12 -1.0
1,298,153 + Xcc-8004.1371.1 0.15 +0.9
1,298,153 + Xcc-8004.1371.1 0.15 +0.0
1,298,154 - Xcc-8004.1371.1 0.15 -1.7
1,298,160 - Xcc-8004.1371.1 0.16 -0.5
1,298,255 - Xcc-8004.1371.1 0.21 +0.6
1,298,373 - Xcc-8004.1371.1 0.28 -1.2
1,298,453 + Xcc-8004.1371.1 0.32 +0.3
1,298,453 + Xcc-8004.1371.1 0.32 +0.6
1,298,453 + Xcc-8004.1371.1 0.32 +0.3
1,298,454 - Xcc-8004.1371.1 0.32 -0.7
1,298,454 - Xcc-8004.1371.1 0.32 -0.1
1,298,454 - Xcc-8004.1371.1 0.32 -1.3
1,298,454 - Xcc-8004.1371.1 0.32 +0.3
1,298,792 + Xcc-8004.1371.1 0.51 -1.3
1,298,792 + Xcc-8004.1371.1 0.51 -0.9
1,298,793 - Xcc-8004.1371.1 0.51 +0.8
1,298,793 - Xcc-8004.1371.1 0.51 -0.4
1,298,960 + Xcc-8004.1371.1 0.61 -1.2
1,299,029 + Xcc-8004.1371.1 0.64 +0.5
1,299,029 + Xcc-8004.1371.1 0.64 +1.5
1,299,030 - Xcc-8004.1371.1 0.65 +0.8
1,299,051 - Xcc-8004.1371.1 0.66 +0.3
1,299,051 - Xcc-8004.1371.1 0.66 +0.7
1,299,079 + Xcc-8004.1371.1 0.67 -1.7
1,299,080 - Xcc-8004.1371.1 0.67 -0.2
1,299,080 - Xcc-8004.1371.1 0.67 +0.2
1,299,080 - Xcc-8004.1371.1 0.67 +0.2
1,299,084 - Xcc-8004.1371.1 0.68 -0.5
1,299,084 - Xcc-8004.1371.1 0.68 -0.3
1,299,253 - Xcc-8004.1371.1 0.77 +0.9
1,299,253 - Xcc-8004.1371.1 0.77 -0.9
1,299,339 + Xcc-8004.1371.1 0.82 -0.4
1,299,356 + Xcc-8004.1371.1 0.83 -0.1
1,299,357 - Xcc-8004.1371.1 0.83 +0.5
1,299,461 + Xcc-8004.1371.1 0.89 +0.2
1,299,461 + Xcc-8004.1371.1 0.89 -0.3
1,299,461 + Xcc-8004.1371.1 0.89 -1.2
1,299,461 + Xcc-8004.1371.1 0.89 +0.6
1,299,461 + Xcc-8004.1371.1 0.89 -0.5
1,299,461 + Xcc-8004.1371.1 0.89 +2.9
1,299,462 - Xcc-8004.1371.1 0.89 +0.5
1,299,462 - Xcc-8004.1371.1 0.89 +0.9
1,299,462 - Xcc-8004.1371.1 0.89 +1.3
1,299,462 - Xcc-8004.1371.1 0.89 -0.7
1,299,462 - Xcc-8004.1371.1 0.89 +1.0
1,299,462 - Xcc-8004.1371.1 0.89 -0.4
1,299,670 - +0.1
1,299,981 - Xcc-8004.1372.1 0.36 -3.1
1,299,981 - Xcc-8004.1372.1 0.36 -2.2
1,300,028 + Xcc-8004.1372.1 0.42 -2.7
1,300,029 - Xcc-8004.1372.1 0.42 -2.5
1,300,029 - Xcc-8004.1372.1 0.42 -2.1
1,300,135 + Xcc-8004.1372.1 0.56 -1.6
1,300,136 - Xcc-8004.1372.1 0.56 -1.0
1,300,136 - Xcc-8004.1372.1 0.56 -2.2
1,300,337 + Xcc-8004.1372.1 0.83 -1.2
1,300,338 - Xcc-8004.1372.1 0.83 -3.0
1,300,338 - Xcc-8004.1372.1 0.83 -3.8
1,300,474 + -1.9
1,300,474 + -2.2
1,300,474 + -3.3
1,300,475 - +0.7
1,300,475 - +0.1
1,300,496 + +0.5
1,300,496 + +0.3
1,300,497 - -0.2
1,300,655 + -1.0

Or see this region's nucleotide sequence