Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4143 and Pf6N2E2_4144 overlap by 4 nucleotides Pf6N2E2_4144 and Pf6N2E2_4145 are separated by 1 nucleotides Pf6N2E2_4145 and Pf6N2E2_4146 overlap by 4 nucleotides Pf6N2E2_4146 and Pf6N2E2_4147 are separated by 4 nucleotides
Pf6N2E2_4143 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 4,823,255 to 4,824,403
_4143
Pf6N2E2_4144 - ABC transporter ATP-binding protein USSDB6B, at 4,824,400 to 4,825,203
_4144
Pf6N2E2_4145 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 4,825,205 to 4,826,143
_4145
Pf6N2E2_4146 - Membrane lipoprotein lipid attachment site containing protein USSDB6D, at 4,826,140 to 4,826,772
_4146
Pf6N2E2_4147 - Fused spore maturation proteins A and B, at 4,826,777 to 4,828,006
_4147
Position (kb)
4825
4826
4827 Strain fitness (log2 ratio)
-2
-1
0
1 at 4824.505 kb on + strand, within Pf6N2E2_4144 at 4824.505 kb on + strand at 4824.505 kb on + strand, within Pf6N2E2_4144 at 4824.505 kb on + strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.506 kb on - strand, within Pf6N2E2_4144 at 4824.835 kb on + strand, within Pf6N2E2_4144 at 4824.835 kb on + strand, within Pf6N2E2_4144 at 4824.835 kb on + strand, within Pf6N2E2_4144 at 4824.836 kb on - strand, within Pf6N2E2_4144 at 4824.836 kb on - strand, within Pf6N2E2_4144 at 4824.836 kb on - strand, within Pf6N2E2_4144 at 4825.039 kb on + strand, within Pf6N2E2_4144 at 4825.039 kb on + strand, within Pf6N2E2_4144 at 4825.039 kb on + strand, within Pf6N2E2_4144 at 4825.039 kb on + strand, within Pf6N2E2_4144 at 4825.039 kb on + strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.040 kb on - strand, within Pf6N2E2_4144 at 4825.083 kb on - strand, within Pf6N2E2_4144 at 4825.083 kb on - strand, within Pf6N2E2_4144 at 4825.141 kb on + strand at 4825.141 kb on + strand at 4825.142 kb on - strand at 4825.142 kb on - strand at 4825.142 kb on - strand at 4825.142 kb on - strand at 4825.142 kb on - strand at 4825.142 kb on - strand at 4825.322 kb on + strand, within Pf6N2E2_4145 at 4825.322 kb on + strand, within Pf6N2E2_4145 at 4825.380 kb on - strand, within Pf6N2E2_4145 at 4825.999 kb on + strand, within Pf6N2E2_4145 at 4826.103 kb on - strand at 4826.160 kb on + strand at 4826.170 kb on - strand at 4826.177 kb on + strand at 4826.242 kb on + strand, within Pf6N2E2_4146 at 4826.242 kb on + strand, within Pf6N2E2_4146 at 4826.383 kb on + strand, within Pf6N2E2_4146 at 4826.756 kb on + strand at 4826.793 kb on + strand at 4826.793 kb on + strand at 4826.889 kb on + strand at 4826.889 kb on + strand at 4826.889 kb on + strand at 4826.889 kb on + strand at 4826.889 kb on + strand at 4826.889 kb on + strand at 4826.890 kb on - strand at 4826.904 kb on + strand, within Pf6N2E2_4147 at 4826.904 kb on + strand, within Pf6N2E2_4147 at 4826.904 kb on + strand, within Pf6N2E2_4147 at 4826.905 kb on - strand, within Pf6N2E2_4147 at 4826.905 kb on - strand, within Pf6N2E2_4147 at 4826.905 kb on - strand, within Pf6N2E2_4147 at 4827.080 kb on + strand, within Pf6N2E2_4147 at 4827.080 kb on + strand, within Pf6N2E2_4147 at 4827.080 kb on + strand, within Pf6N2E2_4147 at 4827.081 kb on - strand, within Pf6N2E2_4147 at 4827.081 kb on - strand, within Pf6N2E2_4147 at 4827.081 kb on - strand, within Pf6N2E2_4147 at 4827.081 kb on - strand, within Pf6N2E2_4147
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 4,824,505 + Pf6N2E2_4144 0.13 +0.9 4,824,505 + +1.7 4,824,505 + Pf6N2E2_4144 0.13 +0.1 4,824,505 + Pf6N2E2_4144 0.13 +0.4 4,824,506 - Pf6N2E2_4144 0.13 -0.4 4,824,506 - Pf6N2E2_4144 0.13 -0.3 4,824,506 - Pf6N2E2_4144 0.13 +0.2 4,824,506 - Pf6N2E2_4144 0.13 +0.2 4,824,506 - Pf6N2E2_4144 0.13 -1.9 4,824,506 - Pf6N2E2_4144 0.13 -0.2 4,824,506 - Pf6N2E2_4144 0.13 -1.8 4,824,506 - Pf6N2E2_4144 0.13 +0.2 4,824,835 + Pf6N2E2_4144 0.54 -0.8 4,824,835 + Pf6N2E2_4144 0.54 -0.5 4,824,835 + Pf6N2E2_4144 0.54 +0.1 4,824,836 - Pf6N2E2_4144 0.54 +0.5 4,824,836 - Pf6N2E2_4144 0.54 -0.3 4,824,836 - Pf6N2E2_4144 0.54 +0.3 4,825,039 + Pf6N2E2_4144 0.79 -0.1 4,825,039 + Pf6N2E2_4144 0.79 +1.6 4,825,039 + Pf6N2E2_4144 0.79 +0.7 4,825,039 + Pf6N2E2_4144 0.79 +0.3 4,825,039 + Pf6N2E2_4144 0.79 +0.2 4,825,040 - Pf6N2E2_4144 0.80 -1.2 4,825,040 - Pf6N2E2_4144 0.80 -0.6 4,825,040 - Pf6N2E2_4144 0.80 -0.4 4,825,040 - Pf6N2E2_4144 0.80 +0.4 4,825,040 - Pf6N2E2_4144 0.80 +0.2 4,825,040 - Pf6N2E2_4144 0.80 +0.8 4,825,040 - Pf6N2E2_4144 0.80 +0.7 4,825,083 - Pf6N2E2_4144 0.85 -0.3 4,825,083 - Pf6N2E2_4144 0.85 -0.2 4,825,141 + -0.1 4,825,141 + -0.1 4,825,142 - -0.3 4,825,142 - -0.5 4,825,142 - -0.8 4,825,142 - +1.0 4,825,142 - -0.5 4,825,142 - +0.0 4,825,322 + Pf6N2E2_4145 0.12 -0.4 4,825,322 + Pf6N2E2_4145 0.12 -1.2 4,825,380 - Pf6N2E2_4145 0.19 -0.1 4,825,999 + Pf6N2E2_4145 0.85 -1.1 4,826,103 - +0.2 4,826,160 + -0.0 4,826,170 - +0.5 4,826,177 + +0.4 4,826,242 + Pf6N2E2_4146 0.16 +0.2 4,826,242 + Pf6N2E2_4146 0.16 -0.4 4,826,383 + Pf6N2E2_4146 0.38 -1.3 4,826,756 + +1.3 4,826,793 + -0.2 4,826,793 + +0.7 4,826,889 + -0.8 4,826,889 + +0.3 4,826,889 + -0.4 4,826,889 + +1.1 4,826,889 + +1.1 4,826,889 + -0.1 4,826,890 - +0.8 4,826,904 + Pf6N2E2_4147 0.10 +1.4 4,826,904 + Pf6N2E2_4147 0.10 +0.8 4,826,904 + Pf6N2E2_4147 0.10 -0.0 4,826,905 - Pf6N2E2_4147 0.10 -0.3 4,826,905 - Pf6N2E2_4147 0.10 -1.3 4,826,905 - Pf6N2E2_4147 0.10 -0.0 4,827,080 + Pf6N2E2_4147 0.25 +1.6 4,827,080 + Pf6N2E2_4147 0.25 +0.8 4,827,080 + Pf6N2E2_4147 0.25 +0.7 4,827,081 - Pf6N2E2_4147 0.25 +1.4 4,827,081 - Pf6N2E2_4147 0.25 +0.6 4,827,081 - Pf6N2E2_4147 0.25 -1.2 4,827,081 - Pf6N2E2_4147 0.25 +0.6
Or see this region's nucleotide sequence